sk-sahu

sig-bio-shiny

A standalone interactive application for detecting biological significance on a set of genes

Snakeflows

Collective Snakemake workflows for easy and reproducible NGS data analysis.

learn-R

Materials to learn R focused on Lab Biologist

PGRB

Practical Guide to Reproducibility in Bioinformatics (Work In Progress)

sk-sahu.github.io

Personal Webpage https://sk-sahu.github.io

covid19-dashboard

Yet another covid19-dashboard

EcoGEx

Arabidopsis EcoGEx (R-📦 + 🕸️-App)

mamba

docker image for mamba - https://github.com/QuantStack/mamba

sigbio-shiny-slides

bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

bioconductor_docker_shiny

Bioconductor docker image with Shiny Server.

blog

Blogging site hosted on Netlify (https://sksahu-blog.netlify.com)

code

Ready to use Gitpod/VScode IDE with Prebuilt Dev Environment

dc-genomics-workshop-testout

form

A form deploy via gh-pages

learn-python

This repository host a binder instance with few libraries installed for teaching purpose

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-omics-state-of-the-field

Analyses for "State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing"

notes

Live (.ipynb) and static (.md) notebooks

rnadeseq

Differential gene expression analysis and pathway analysis of RNAseq data

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

rnaseq-nf

A proof of concept of RNAseq pipeline

runner

Ready to use Running R Instances (Run-R == RunneR)

sarek

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

sk-sahu

snakemake-wrappers

This is the development home of the Snakemake wrapper repository, see

staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

streamlit-example

Example Streamlit app that you can fork to test out share.streamlit.io

the-turing-way

Host repository for The Turing Way: a how to guide for reproducible data science