gladstone-institutes's repositories
Bioinformatics-Workshops
Workshops presented by the Gladstone Bioinformatics Core
Interactive-Enrichment-Analysis
A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
RMeDPower2
Helping design and analyses of data from repeated measures experiments
scRNA-seq_shiny_app
R Shiny application for scRNA-seq
GB-JL-1189-Jeremy-GEDI
GEDI value cutoff threshold estimation
AlleleAnalyzer_bcft_RT
A software tool for personalized and allele-specific CRISPR editing.
annotate-genes
Filter GO annotations for a list of genes using mygene.info via R
BC-AM-1148
R Shiny application for scRNA-seq
BC-TM-1123-KC
Tamer Mohammed | scRNA-seq
bioinformatics-datasets
public datasets for testing, benchmarking and comparison
bioinformatics-r-functions
Collection of generally useful R functions
C3_R_Bootcamp_Bonus_Day
Slides and materials for the last day of the C3 R bootcamp with topics chosen by the students
GI-bulk-RNAseq
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
git-flight-rules
Flight rules for git
knitr_case_studies
Inference case studies in knitr
MDC-971-KC
HPV type identification
post-pipeline_RNA-seq_workshop
RNA-seq workshop starting from a matrix of counts, with a **primary focus on linear modeling for differential expression**
r_docker
Docker container for genomics analyses in R.
RASLseqTools
RASLseq FASTQ to RASLprobe counts.
stancon2018_intro
Materials for StanCon 2018 intro class
stancon2018helsinki_intro
StanCon2018 Helsinki Tutorial
wynton-tutorials
Legacy wynton documentation for reference
YH_MN01_NatureNeuroscience_paper
single-nucleus RNA-seq analysis (15 samples)