denovo-assembly
There are 0 repository under denovo-assembly topic.
- Language:C++ 483
- Language:TeX 291
tseemann / nullarbor
:floppy_disk: :page_with_curl: "Reads to report" for public health and clinical microbiology
Language:Perl 130- Language:TeX 108
- Language:Java 82
- Language:C 74
lh3 / fermi-lite
Standalone C library for assembling Illumina short reads in small regions
Language:C 72lvrcek / GNNome-assembly
Learning to untangle genome assembly with graph neural networks.
Language:Python 69- Language:Nextflow 51
- Language:C 26
PalMuc / TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Language:Nextflow 26denisbeslic / denovopipeline
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
Language:Python 25telatin / nextflow-example
A simple DSL2 workflow: tutorial
Language:Nextflow 23UPHL-BioNGS / Donut_Falls
Basic workflow for nanopore sequencing data
Language:Nextflow 12- Language:Perl 10
nf-core / denovohybrid
UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads
Language:Nextflow 8- Language:Java 7
holmrenser / IOGA
Iterative Organellar Genome Assembly
Language:Python 5- neutronstar
De novo assembly pipeline for 10X linked-reads using Supernova
Language:Nextflow 4 shumengjun / UNEAK
Calling SNPs using UNEAK (de novo) pipeline for ponderosa pine
Language:Shell 4- Language:Python 3
biocorecrg / transcriptome_assembly
Biocore's de novo transcriptome assembly workflow based on Nextflow
Language:Nextflow 3joanmarticarreras / VANIR
NextFlow pipeline for Virus Variant calling and de novo Assembly of Nanopore and Illumina Reads
Language:HTML 2SciLifeLab / NGI-NeutronStar
De novo assembly pipeline for 10X linked-reads, used at the SciLifeLab National Genomics Infrastructure.
Language:Nextflow 2CSCLabTW / CloudEC
CloudEC is a MapReduce-based algorithm for correcting errors in next-generation sequencing big data.
Language:Java 1- Language:TeX 1
- Language:Nextflow 0
QReadSelector is a subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Language:Java 0eacooper400 / RAD_Pipeline_Info
Bioinformatics Pipeline for dRADseq Data
Language:Perl 0Mahendra-Maiti / De-Novo-Assembly
Python based implementation of De-Novo transcriptome assembly
Language:Python 0mansikath / whole-genome-sequencing-pipeline
A comprehensive workflow for de novo assembly of whole-genome shotgun sequencing data using Velvet, followed by BLAST searches to analyze assembled contigs.
Language:HTML 0upendrabhattarai / denovo-RNA-Seq-On-Nesi
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
0- Language:Perl
- Language:C++
