UPHL-BioNGS's repositories
Donut_Falls
Basic workflow for nanopore sequencing data
walkercreek
A nextflow pipeline for influenza genome analysis
ICA_Modified_Nextflow_Scripts
To be able to run Nextflow scripts that are published on Github on ICA they must be modified because ICA does not have Nextflow do a gitpull and an ICA user cannot pass config or param files.
General_LW_scripts
The scripts that UPHL uses to download things from basespace and run respective workflows
Dockerfiles
A collection of Dockerfiles for the images that we use
Language:Dockerfile000
mycosnp-nf
CDCgov/mycosnp-nf
Language:NextflowApache-2.0000
Nextstrain_Build
A Nextflow Script that performs a Nextstrain 'Build' which creates a detailed phylogentic visualization that can be seen with the Nextstain Auspice tool.