Lovro Vrček's repositories
GNNome-assembly
Learning to untangle genome assembly with graph neural networks.
NeuralLayout
A GNN model that executes simplification algorithms used in the layout phase of de novo genome assembly process.
advent-of-code-2021
My Advent of Code 2021 solutions in C++
advent-of-code-2020
My Advent of Code 2020 solutions in Python
assembly_graph_utils
Some basic functions for creating assembly graphs in the DGL format
Category_Theory_Machine_Learning
List of papers studying machine learning through the lens of category theory
hifi-simulator
A simulator for PacBio HiFi reads
LongReadClassification
Deep learning model for classifying reads in de novo genome assembly.
reactome2py
python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
Artificial-Intelligence
Awesome AI Learning with +100 AI Cheat-Sheets, Free online Books, Top Courses, Best Videos and Lectures, Papers, Tutorials, +99 Researchers, Premium Websites, +121 Datasets, Conferences, Frameworks, Tools
awesome-advent-of-code
A collection of awesome resources related to the yearly Advent of Code challenge.
ivory-genome-mapper
A toy mapper for genomic sequences. Code in C++.
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
hifiasm
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
igv-docs-website
Markdown-based documentation website - IGV desktop application
mtcnn-pytorch
Joint Face Detection and Alignment using Multi-task Cascaded Convolutional Networks