Biocore@CRG's repositories
master_of_pores
Nextflow pipeline for analysis of direct RNA Nanopore reads
BioNextflow
A collection of modules and sub-workflows for Nextflow
allele_specific_RNAseq
Allele Specific RNAseq
docker-debian-perlbrew
Basic Docker image for running Debian with perlbrew installed
transcriptome_assembly
Biocore's de novo transcriptome assembly workflow based on Nextflow
CRG_Nextflow_June_2022
Nextflow course
interproscan_docker
Docker recipe for building Interproscan
jbrowse_docker
Docker installation of JBrowse
nextflow-course-2023-fall
Nextflow course
nextflow-course-2024-alba
Nextflow course for ALBA - 2024
CRG_Containers_June_2022
Scientific Containers CRG Internal Course
PhD_course_genomics_format_2022
PhD course about genomics format (2022)
PhD_course_genomics_format_2023
PhD course about genomics format 2023
ropes-linux-mop2-2023
Course for ROPES summer school, May 2023
bento
Packer templates for building minimal Vagrant baseboxes for multiple platforms
bioconda-recipes
Conda recipes for the bioconda channel.
biocorecrg.github.io
CRG's Bioinformatics Core facility GitHub web-page
contamination-nf
Nextflow pipeline for checking contamination problems with reads among other tasks
CRG_Containers_October_2022
Scientific Containers CRG Internal Course
docker-almalinux-perlbrew
Images for running Perlbrew scripts using Almalinux.
docker-amazonlinux-perlbrew
Basic Docker image for running AmazonLinux with perlbrew installed
docker-backup-scripts
Scripting to backup all your running containers
docker-centos-legacy-perlbrew
Legacy repository for CentOS 7 Docker builds
packer-templates
Repository for storing Packer templates used in different projects
PhD_course_containers_2023
Scientific Containers CRG PhD Course 2023
Qcloud_docker
This is the dockerfile for Qcloud pipeline
tRAX
tRNA Analysis of eXpression