Upen Bhattarai's repositories
Long_read_genome_assembly
This is a compilation of the scripts I used for genome assembly using long read sequencing data
Earwig_genome_project
This repository contains all the scripts used to assemble and annotate the Earwig genome
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
Blobtools_for_removing_contaminations_in_genome_assembly
This repository contains scripts I used to create blob database for a de novo genome assembly for visualisation and removing contaminants
denovo-RNA-Seq-On-Nesi
This is a compilation of my scripts for denovo-RNA-Seq assembly, annotation, and get count metrics for Differential gene expression analysis in Nesi hpc.
Genomic-Interactive-Visualization-Engine
Genomic Interactive Visualization Engine
gcp-for-bioinformatics
GCP for Bioinformatics Researchers
homemade-machine-learning
🤖 Python examples of popular machine learning algorithms with interactive Jupyter demos and math being explained
knowledgebase
recipes that save time
moon_theme_personal.website
Personal Website
Nematode_genome_assembly
Workflow for nematode genome assembly using ONT and 10x reads
Nematode_Genome_Project
Scripts used for the curation and annotation of Nematode genome
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
shell-genomics
Introduction to the Command Line for Genomics
Training-modules
Materials for short, half-day workshops
upendrabhattarai.github.io
Personal website
upendrabhattarai.github.io.another.one
Personal website