common-workflow-language

There are 3 repositories under common-workflow-language topic.

common-workflow-language
common-workflow-language / common-workflow-language
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
cwl common-workflow-language containers workflows science workflow commonwl sciworkflows
Language:Common Workflow Language 1469
DataBiosphere / toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
cwl python mesos slurm gridengine workflow pipeline aws common-workflow-language kubernetes wdl workflow-description-language
Language:Python 917
cwltool
common-workflow-language / cwltool
Common Workflow Language reference implementation
common-workflow-language cwl workflows containers science commonwl sciworkflows
Language:Python 354
rabix / composer
Visual and code editor for Common Workflow Language
cwl common-workflow-language ide editor
Language:TypeScript 308
Barski-lab / cwl-airflow
Python package to extend Airflow functionality with CWL1.1 support
common-workflow-language commonwl containers cwl cwl-airflow cwl-descriptor dag workflow
Language:Python 190
rabix / bunny
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
cwl workflow docker executor java common-workflow-language commonwl
Language:Common Workflow Language 75
benten
rabix / benten
A language server for Common Workflow Language
common-workflow-language cwl workflow editor language-server cwl-documents ide
Language:Python 66
rabix / cwl-ts
Typescript data model for Common Workflow Language
common-workflow-language workflow cwl typescript
Language:TypeScript 49
cwlviewer
common-workflow-language / cwlviewer
A web application to view and share Common Workflow Language workflows
cwl common-workflow-language workflow workflows java
Language:Java 47
sbg / sevenbridges-python
SevenBridges Python Api bindings
sevenbridges api-client rest-client common-workflow-language bioinformatics
Language:Python 46
user_guide
common-workflow-language / user_guide
The CWL v1.0 - v1.2 user guide
common-workflow-language cwl workflow workflows
Language:Common Workflow Language 43
PMCC-BioinformaticsCore / janis
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
workflow common-workflow-language workflow-description-language cwl wdl python
Language:Python 43
cwl-utils
common-workflow-language / cwl-utils
Python utilities for CWL
common-workflow-language commonwl cwl
Language:Python 40
sbg / sevenbridges-r
Seven Bridges API Client, CWL Schema, Meta Schema, and SDK Helper in R
api-client bioconductor bioinformatics cloud common-workflow-language sevenbridges
Language:R 36
workflux / workflUX
An open-source, cloud-ready web application for simplified deployment of big data workflows.
common-workflow-language bigdata bioinformatics web-application workflows workflow
Language:JavaScript 33
crim-ca / weaver
Weaver: Workflow Execution Management Service (EMS); Application, Deployment and Execution Service (ADES); OGC API - Processes; WPS; CWL Application Package
ogc wps cwl workflow remote-execution ems ades common-workflow-language web-application web-processing-service ogc-api-processes
Language:Python 28
EBI-Metagenomics / pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
common-workflow-language cwl workflow cwl-descriptions cwl-workflow mgnify metagenomic-pipeline metagenomic-analysis metagenomic-classification metagenomic-data metagenomics amplicon-pipeline wgs-analysis
Language:HTML 23
otiai10 / cwl.go
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle
cwl common-workflow-language golang bioinformatics
Language:Go 22
sbg / sevenbridges-cwl
Seven Bridges Python library for programatic generation of CWL workflows.
python cwl sevenbridges common-workflow-language bioinformatics
Language:Python 20
cwltest
common-workflow-language / cwltest
Framework for testing CWL tools and workflows
common-workflow-language cwl
Language:Python 18
otiai10 / yacle
Yet Another CWL Engine by Golang
cwl common-workflow-language bioinformatics
Language:Go 18
common-workflow-lab / ipython2cwl
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
cwl jupyter-notebook jupyter common-workflow-language docker
Language:Python 15
cwl-website
common-workflow-language / cwl-website
www.commonwl.org
common-workflow-language cwl
Language:JavaScript 10
tom-tan / ep3
A workflow engine for CWL that aims to have a pluggable architecture
common-workflow-language commonwl workflow-engine workflow cwl
Language:Ruby 10
rabix / cwl-format
A very opinionated code formatter for CWL
cwl code-formatter common-workflow-language
Language:Common Workflow Language 9
kclhi / phenoflow
Standardise and share computable disease definitions
phenomics common-workflow-language phenotyping project monorepo
Language:JavaScript 8
sbg / tidycwl
Tidy Common Workflow Language Tools and Workflows
common-workflow-language tidyverse bioinformatics-pipeline sevenbridges
Language:Common Workflow Language 8
suecharo / genpei
An implementation of GA4GH Workflow Execution Service Standard as a microservice.
common-workflow-language cwltool docker ga4gh-wes workflow
Language:Python 8
tom-tan / cwl-template-for-vscode
A template to write CWL documents with VSCode with remote container extension
commonwl cwl vscode common-workflow-language template
Language:Dockerfile 8
sbg / bco-app
BCO App by Seven Bridges
biocompute-objects common-workflow-language shiny-apps sevenbridges biocompute
Language:R 7
tom-tan / cwl-inspector
This tool provides a handy way to inspect properties of tools or workflows written in Common Workflow Language
cwl common-workflow-language
Language:Ruby 7
tom-tan / cwl-mode
CWL mode for Emacs
emacs common-workflow-language
Language:Emacs Lisp 7
EBI-Metagenomics / workflow-is-cwl
This repository contains CWL descriptions of the various tools which will allow you to build workflows for the annotation of transcripts
cwl-workflow common-workflow-language cwl workflow cwl-descriptions transdecoder diamond phmmer cwl-description marine transcriptome
Language:HTML 6
fairagro / m4.4_sciwin_client
🦀 SciWIn Client: Reproducible computational Workflows made easy!
automation common-workflow-language cwl rdm workflow commonwl science sciworkflows
Language:Rust 5
msk-access / cwl-commandlinetools
Central location for CWL CommandLineTools
cwl command common-workflow-language cwltool
Language:Common Workflow Language 5
onnovalkering / cwl-rs
The Common Workflow Language (CWL) object model for Rust.
cwl common-workflow-language
Language:Common Workflow Language 5

common-workflow-language

common-workflow-language / common-workflow-language

DataBiosphere / toil

common-workflow-language / cwltool

rabix / composer

Barski-lab / cwl-airflow

rabix / bunny

rabix / benten

rabix / cwl-ts

common-workflow-language / cwlviewer

sbg / sevenbridges-python

common-workflow-language / user_guide

PMCC-BioinformaticsCore / janis

common-workflow-language / cwl-utils

sbg / sevenbridges-r

workflux / workflUX

crim-ca / weaver

EBI-Metagenomics / pipeline-v5

otiai10 / cwl.go

sbg / sevenbridges-cwl

common-workflow-language / cwltest

otiai10 / yacle

common-workflow-lab / ipython2cwl

common-workflow-language / cwl-website

tom-tan / ep3

rabix / cwl-format

kclhi / phenoflow

sbg / tidycwl

suecharo / genpei

tom-tan / cwl-template-for-vscode

sbg / bco-app

tom-tan / cwl-inspector

tom-tan / cwl-mode

EBI-Metagenomics / workflow-is-cwl

fairagro / m4.4_sciwin_client

msk-access / cwl-commandlinetools

onnovalkering / cwl-rs