amplicon-pipeline

There are 0 repository under amplicon-pipeline topic.

• EBI-Metagenomics / pipeline-v5

  This repository contains all CWL descriptions of the MGnify pipeline version 5.0.

  common-workflow-languagecwlworkflowcwl-descriptionscwl-workflowmgnifymetagenomic-pipelinemetagenomic-analysismetagenomic-classificationmetagenomic-datametagenomicsamplicon-pipelinewgs-analysis
  Language:HTML 21

• quadram-institute-bioscience / dadaist2

  Dadaist2 🟨 Highway to R

  dada2asvbioinformatics16samplicon-pipelinetaxonomyphyloseqmetabarcoding
  Language:HTML 13

• Aveglia / vAMPirus

  Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.

  nextflownextflow-pipelinesvirusvirusesamplicon-sequencingampliconamplicon-pipeline
  Language:Nextflow 9

• yoann-dufresne / SLIM

  A web app for environmental DNA metabarcoding analysis

  pipelinewebserverilluminabioinformaticsamplicon-sequencingamplicon-pipeline
  Language:JavaScript 9

• 444thLiao / amplicon_workflow

  amplicon analysisng pipelines based on luigi with qiime2-dada2/ qiime2-deblur/vsearch/usearch

  amplicon-pipelineluigi-pipeline
  Language:Python 6

• sebrauschert / OceanOmics-amplicon

  A pipeline to analyse marine fish amplicon data

  ampliconamplicon-pipelinebioinformaticsbioinformatics-pipelinedada2
  Language:R 4

• ohmeta / qiimepi

  Snakemake version of QIIME2

  amplicon-pipelineqiime2snakemake-workflows
  Language:Python 1

• CCBR / CCBR_circRNA_AmpliconSeq

  Snakemake workflow to process circRNA AmpliconSeq datasets generated to study circRNAs in KSHV and human hosts using divergent primers.

  snakemake-workflowamplicon-sequencingamplicon-pipelinecircrnacircrna-pipeline
  Language:Shell