PMCC - Bioinformatics Core

janis

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

janis-core

Core python modules for Janis Pipeline workflow assistant

janis-workshops

Workshops for the Janis pipeline framework

python-wdlgen

Python classes to loosely generate WDL

CONTRA

janis-assistant

A language and engine agnostic workflow runner for Janis

janis-bioinformatics

Repository of bioinformatics tools for the pipelines module

janis-pipelines

Example pipelines with Janis

scripts

Collection of Peter Mac Scripts

janis-training

Janis Online Training Materials

janis-translate-examples

Examples of using Janis to translate Galaxy & CWL workflows to Nextflow

CWLab

An open-source framework for simplified deployment of the Common Workflow Language using a graphical web interface

dinoflow

Nextflow workflow for MAC-seq

janis-germlineVC

Janis Germline Variant Calling Pipeline

janis-patterns

A repository of common Janis patterns

janis-templates

Configurations for Janis to run at specific organisations

janis-unix

Unix tools and data types for Janis

nextflow-intro-workshop

Introduction to Nextflow and Running nf-core Workflows Workshop

seqliner