PMCC - Bioinformatics Core's repositories
janis-core
Core python modules for Janis Pipeline workflow assistant
janis-workshops
Workshops for the Janis pipeline framework
python-wdlgen
Python classes to loosely generate WDL
janis-assistant
A language and engine agnostic workflow runner for Janis
janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
janis-pipelines
Example pipelines with Janis
janis-training
Janis Online Training Materials
janis-translate-examples
Examples of using Janis to translate Galaxy & CWL workflows to Nextflow
dinoflow
Nextflow workflow for MAC-seq
Language:GroovyMIT000
janis-germlineVC
Janis Germline Variant Calling Pipeline
NOASSERTION000
janis-patterns
A repository of common Janis patterns
janis-templates
Configurations for Janis to run at specific organisations
janis-unix
Unix tools and data types for Janis
nextflow-intro-workshop
Introduction to Nextflow and Running nf-core Workflows Workshop
Language:CSSMIT000