PMCC - Bioinformatics Core's repositories
janis-core
Core python modules for Janis Pipeline workflow assistant
janis-workshops
Workshops for the Janis pipeline framework
python-wdlgen
Python classes to loosely generate WDL
janis-assistant
A language and engine agnostic workflow runner for Janis
janis-bioinformatics
Repository of bioinformatics tools for the pipelines module
janis-pipelines
Example pipelines with Janis
janis-translate-examples
Examples of using Janis to translate Galaxy & CWL workflows to Nextflow
janis-training
Janis Online Training Materials
nextflow-nf-core-workshop-2025_v2
Nextflow and nf-core workshop 2025
AI_Beyond_Omics_Workshop
This workshop is scheduled to take place at the The annual Australian Bioinformatics and Computational Biology Society (ABACBS) conference 2024 at University of Sydney on 7th November 2024. This workshop aims to explore the broad applications of artificial intelligence (AI) technologies that are relevant to bioinformaticians.
CWLab
An open-source framework for simplified deployment of the Common Workflow Language using a graphical web interface
janis-germlineVC
Janis Germline Variant Calling Pipeline
janis-patterns
A repository of common Janis patterns
janis-templates
Configurations for Janis to run at specific organisations
janis-unix
Unix tools and data types for Janis
nextflow-intro-workshop
Introduction to Nextflow and Running nf-core Workflows Workshop
nextflow-nf-core-workshop-2025
Nextflow and nf-core workshop 2025