Duke Center for Genomic and Computational Biology

calrissian

CWL on Kubernetes

GGR-cwl

CWL tools and workflows for GGR

GCB-Dockerfiles

Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.

DukeDSClient

Command line program to allow uploading, downloading, and managing projects in the duke-data-service.

bespin-ui

An ember.js application frontend for bespin-api

scicomp-python

Python lesson for GCB Academy: Intro to Scientific Computing

2022-08-15-duke

Website for the 2022 UPGG Informatics Orientation Bootcamp

D4S2

Web service to facilitate notification and transfer of projects in DukeDS

DukeDataDeliveryPipeline

Services that deliver data stored in Azure between users

gcb-ansible-roles

Ansible roles used by GCB Ansible Playbooks

iMADS

Web portal and supporting services that allow searching/creating TF predictions and preferences.

2018-08-13-Duke

UPGG Informatics Orientation Bootcamp 2018

2019-08-12-Duke

UPGG Informatics Orientation Bootcamp 2019

2021-08-09-Duke

Website for the 2021 UPGG Informatics Orientation Bootcamp

2023-08-23-duke

Website for the 2023 UPGG Informatics Orientation Bootcamp

bespin-api

Web application for running workflows in the cloud

bespin-jobtoken-generator

bespin-mailer

Bespin mail delivery service

biostat-823

Teaching materials for Biostat 823 course

biostat-jupyter

Jupyter Lab container for Biostat courses

BlueSTARR

BlueSTARR: predicting effects of regulatory variants

datadelivery-ui

An ember.js application frontend for d4s2

gcb-web-auth

Django app that integrates Duke OAuth

helmod

Harvard Extensions for Lmod deployment

iMADS-worker

Worker for generating on-demand predictions using Docker and CWL in iMADS

majoros-python-utils

Majoros lab python modules and scripts

openshift-shiny

OpenShift compatible Docker images/config for running shiny apps

prospatheia

Web-based effort reporting tool for GCB informatics

shiny_PD

topdata

Website that dynamically generates trackhub directories