yyoshiaki

Yoshiaki Yasumizu's repositories

VIRTUS

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

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ikra

RNAseq pipeline centered on Salmon

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VIRTUS2

A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.

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2022_shinkei_handson

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MEnet

MEnet is a neural-net based deconvolution method for methylation data.

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NMFprojection

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AJACS95

100

arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

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autoimmune10x_CD4T_Manuscript_2023

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screfmapping

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yyoshiaki.github.io

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2023_schack

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ai_contest_2021

pytorch-based

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bismark_sratools_env

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BSviz

This project was deprecated.

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cellxgene

An interactive explorer for single-cell transcriptomics data

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cellxgeneVIP-gateway

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DLC

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Dockerfiles

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ingest_after_bbknn

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ldsc

LD Score Regression (LDSC)

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leafviz

Just the leafviz parts of Leafcutter

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MEnet_manuscript

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MG_thymoma_Manuscript_2021

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reproduce_json_error

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rnaseqrecipe_chap1

AnnualUpdate

020

scDRS

Single-cell disease relevance score (scDRS)

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scDRS_example

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sclinker-skg

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SoloTE

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