SIMEXP's repositories
load_confounds
Load fMRIprep confounds in python
fmriprep-denoise-benchmark
Benchmark denoising strategies available from fmriprep.
fmriprep-slurm
Generate and run SLURM jobs on HPCs
dynamic-states-parcellations
This repository includes the python script to generate dynamic states of parcellation of functional MRI data at the individual level.
fmriprep-reproducibility
A datalad repository that contains all materials to check for the stability of the fmriprep LTS version
bids_conversion
Scripts to convert data from CCNA and CIMAQ
giga_auto_qc
Automatic quality control for fMRIPrep outputs aimed for large dataset
lab-documentation
SIMEXP-Documentation
rs-autoregression-prediction
Autoregressive model on resting state time series benchmark
cwas_simulation
Simulate a connectome wide association study with real data
difumo_segmentation
This utility download and segment DiFuMo atlas, so each component is exactly one independent region.
fmriprep-denoise-benchmark-reproducible
Create the atlases for the benchmark - parcels has to be individual, none connected blobs
gcn_developmental
Test the GCN model on ds000228
gcn_package
The lab repository for GCN
giga_preprocess2
Preprocess datasets using fMRIPrep
high_confidence_ad
Reproducible companion jupyter boof for https://academic.oup.com/gigascience/article/8/5/giz055/5488104
mapsmasker_benchmark
Easy benchmark on the performance of nilearn NiftiMapsMasker
mist2templateflow
Convert the MIST atlas to fit templateflow naming convention
rs_signal_extract
BIDS App for resting state signal extraction using nilearn.
simexp.github.io
website of the SIMEXP lab
ukbb-preprocess-template
Base directory layout for ukbb-preprocess
ukbb-scripts
UKBB fmriprep preprocessing scripts
wrangling-phenotype
get ukbb data in shape for other projects