niralUser's repositories
SPHARM-PDM
Shape analysis has become of increasing interest to the medical community due to its potential to precisely locate morphological changes between healthy and pathological structures. SPHARM-PDM is a tool that computes point-based models using a parametric boundary description for the computing of Shape analysis.
DTIPlayground
An integrated framework for DWI Image QC and processing
NeuroRuler
A program that calculates head circumference from MRI data (.nii, .nii.gz, .nrrd).
DTIProcessToolkit
DTIProcess is a DTI processing and analysis toolkit developed in UNC and University of Utah
niral_utilities
NIRAL Utilities are open-source applications developped at UNC-Chapel Hill in the Neuro Image Research and Analysis Lab (NIRAL)
DTIAtlasBuilder
This tool creates an Atlas image as an average of several DTI images that will be registered
NeosegPipeline
This tool allows segmentin brain MRI using a multi-atlas based approach either via joint label fusion (ANTS) or via generating a subject-specific atlas.
3DMetricTools
3DMeshMetric is a visualization tool that computes and displays surface-to-surface distance between two triangle meshes using user-specified uniform sampling (based on the source code of MeshValmet: http://www.nitrc.org/projects/meshvalmet).
ShapePopulationViewer
ShapePopulationViewer is a software that allows you to dynamically interact with multiple surfaces at the same time
BreezeStyleSheets
Breeze/BreezeDark-like Qt StyleSheets
MeshValmet
MeshValmet is a tool that measures surface to surface distance between two triangle meshes using user-specified uniform sampling
RigidAlignment
Rigid alignment of landmarks on the unit sphere
CombineDWIs
Combine Diffusion Weighted Images (NRRD) with potentially different b-values
CurveCompare
Compares two fibers file with different metrics: euclidean distance (closest points), tangent metric, curvature metric, overlap, probabilistic overlap
dcm_to_bids
Converts a dicom directory to bids format
DTIPlaygroundLab
DTIPlayground Web UI Project
DTIPlaygroundNative
DTIPlayground Native
DTIPlaygroundTools
DTIPlayground required toolset build script
ITKTransformTools
Tools allowing to perform basic operations on ITK transform files such as printing their content, concatenating them, inverting them, computing the smaller bounding box around a transformed image...
MIDLLatexTemplate
Latex template for the MIDL Conference
MUMMI
MUlti-Modality Mri Imputation
NormalizeDWIGradientVectors
This tool normalizes Diffusion Weighted Images (DWI) gradients.
PolyDataCompression
Compress VTK or VTP files, allows to select the data type (binary, ASCII or appended), the level of compression (between 0 and 9, the difference however is barely noticeable) and enable the use of the wildcard (*) with SlicerExecutionModel.
ReadImageHeader
Small tool to print (ITK) image header information. It can also be used to convert an image into a different format.
SLCN_challenge_UNC
This repository contains the code used for the Surface Learning For Clinical Neuroscience