Eden-Kramer Lab's repositories
spectral_connectivity
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
replay_trajectory_classification
State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
ripple_detection
Tools for identifying sharp wave ripple events using LFPs
replay_classification
State space models for categorization of replay content from multiunit spiking activity. Deng et al. 2016
loren_frank_data_processing
Python tools for reading in data from Loren Frank's lab
rate_adjustment_for_spike_coherence
An implementation of the spike-rate adjustment method from Aoi et al. (2015) for comparing spike-field and spike-spike coherences.
replay_identification
A semi-latent state-space model that combines movement, LFP, and ensemble spiking information to identify periods of replay and decode its content in real time. Long Tao et al., unpublished.
spline-granger-causality
A procedure to reduce the parameters estimate in Granger-causal analysis through temporal smoothing.
Multi-Dimensional-Decoder
Efficient Decoding of Multi-dimensional Signals from Population Spiking Activity Using a Gaussian Mixture Particle Filter
SSPE-paper
Code repository to recreate the simulations and plots of the State Space model for Real Time Phase Estimation paper as well as code for the state space model in SSPE
time_rescale
Tools for evaluating the goodness of fit of a point process model via the time rescaling theorem
UncertaintyInPhase
Repository to run analyses described in paper: "Different methods to estimate the phase of neural rhythms agree, but only during times of low uncertainty "
Common_Oscillator_Models
Code repository of implementing the Common Oscillator Model
video_behavior_tracking
Python package to track position, velocity, head direction from video for Loren Frank datasets
regularized_glm
Tools for fitting a generalized linear model with a L2 or difference penalty
spindle_detector
Detect spindles using an HMM
Apnea_dynamics_toolbox
The sleep apnea dynamics toolbox implemented in Matlab
CNN_Spectrogram_Algorithm
A method to classify spectrograms from raw EEG data using a convolutional neural network
Eden-Kramer-Lab
Website
GMM_PointProcess
Closed Form Solution for 2D Replay Decoder Using Gaussian Mixture Models