antibody

There are 4 repositories under antibody topic.

getantibody / antibody
The fastest shell plugin manager.
antibody dotfiles golang zsh
Language:Go 1685
milaboratory / mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
bioinformatics immunology antibody t-cell-receptor t-cell rep-seq 10x rna-seq sequencing single-cell
Language:Kotlin 309
awesome-vdj
slowkow / awesome-vdj
📚 Tools and databases for analyzing HLA and VDJ genes.
bioinformatics immunology antibody t-cell-receptor hla-database hla-typing b-cell-receptor awesome-list hla bcr tcr vdj
180
mikessh / vdjtools
Post-analysis of immune repertoire sequencing data
antibody bioinformatics immunology rep-seq repertoire stat t-cell t-cell-receptor
Language:Groovy 126
Merck / BioPhi
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
antibody humanization humanness sapiens oasis
Language:Python 125
mikessh / migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
antibody bioinformatics immunology ngs rep-seq sequencing t-cell t-cell-receptor
Language:Groovy 49
Genentech / walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
antibody machine-learning protein-design protein-sequences proteins
Language:Python 43
immunomind / covid19
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
covid-19 covid-19-data sars-cov-2 t-cell antibody rep-seq immune-repertoire-data single-cell-data scrna-seq-data airr-analysis bioinformatics immunoinformatics computational-immunology
42
mikessh / migec
A RepSeq processing swiss-knife
adapter antibody bioinformatics immunology ngs rep-seq sequencing umi
Language:Groovy 41
Merck / Sapiens
Sapiens is a human antibody language model based on BERT.
antibody bert embeddings language-model sapiens
Language:Jupyter Notebook 38
xinyu-dev / annotate_v
Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
antibody-numbering antibody antibodies antibody-annotation chothia annotation-scheme imgt
Language:Jupyter Notebook 25
bobsoppe / zsh-ssh-agent
Ssh-agent management for zsh
antibody antigen oh-my-zsh ssh ssh-agent zplug zsh zsh-plugin
Language:Shell 23
gf712 / AbPyTools
Python package for analysis of antibody heavy and light chains
antibody python antibody-sequences bioinformatics antibody-numbering
Language:Python 23
haddocking / HADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocol
antibody haddock utrecht-university
Language:Python 19
frankroeder / dotfiles
$HOME of my ~/.dotfiles (macOS & Linux)
zsh neovim macos tmux homebrew kubectl alacritty antibody dotfiles m1 arm x86 docker nvim skhdrc yabai catppuccin sketchybar
Language:Shell 18
alchemab / parapred-pytorch
PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
pytorch deep-learning antibody-sequences antibody proteins protein-sequences
Language:Python 17
BEAM-Labs / BALM
Inference code for BALM
antibody antibody-structure-prediction language-model
Language:Python 16
stitch
snijderlab / stitch
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
mass-spectrometry antibody sequencing
Language:C# 16
dotfiles
0-vortex / dotfiles
A utility first dev tooling repo with dotbot, zsh, antibody, defaults, pkgsrc, plist, fonts, git-extras, git-quick-stats, atom, pip, npm, cargo, go, karabiner, carpalx full optimization.
karabiner dotfiles atom zsh cargo dotbot antibody plist fonts git-extras pip npm golang carpalx git-quick-stats pkgsrc macos
Language:Shell 14
bushidocodes / dotfiles
Dotbot managed dotfiles for a polyglot dev using WSL. Includes PowerShell stuff for Windows Installation
wsl wsl2 dotfiles zsh vscode antibody windows powershell
Language:Shell 14
mit-ll / AlphaSeq_Antibody_Dataset
Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide
sars-cov-2 representation-learning machine-learning dataset antibody antibody-sequences binding-affinity
14
brandonsie / epitopefindr
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
blastp peptides alignment epitope-discovery antibody
Language:R 12
colbyford / SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
alphafold2 antibody bioinformatics computational-biology covid-19 deep-learning haddock machine-learning rosettafold sars-cov-2
Language:Jupyter Notebook 12
Terkild / CITE-seq_optimization
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
cite-seq single-cell-rna-seq single-cell-omics single-cell-proteomics antibody cytometry
Language:R 9
TobiasHeOl / kasearch
KA-Search: Rapid and exhaustive sequence identity search of known antibodies
rapid antibody exhaustive identity repertoire search sequence similarity
Language:Jupyter Notebook 9
adhamu / dotfiles
For macOS & Linux
macos brew cask python npm yarn bash docker antibody dotfiles linux starship
Language:Shell 8
cognano / AVIDa-hIL6
Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions"
antibody vhh dataset drug-discovery antigen-antibody-interaction
Language:Jupyter Notebook 8
krdav / SPURF
Substitution Profiles Using Related Families
substitution-profile bcr b-cell antibody rep-seq
Language:Python 8
prescient-design / walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
antibody machine-learning protein-design protein-sequences proteins
Language:Python 8
kevinmicha / ANTIPASTI
ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.
antibody deep-learning normal-mode-analysis
Language:Jupyter Notebook 7
markosamuli / dotfiles
My ~/.dotfiles
dotfiles gitconfig editorconfig shell zsh antibody bash
Language:Shell 7
yjcyxky / antibody-dl
A Collection of Platform, Tools, and Resources for Antibody Engineering
antibody awesome-list curation drug-design drug-discovery antibody-design collection
Language:Python 7
arsham / dotfiles
My dotfiles for zsh, tmux, etc.
antibody dotfiles tmux zsh zshrc
Language:Shell 6
jrwrigh / dotfiles2.0
My (new) dotfiles repository
antibody dotfiles neovim tmux zsh
Language:Shell 5
longpdo / dotfiles
My macOS dev setup: zsh configuration and a collection of bash scripts.
dotfiles macos homebrew bash-script antibody
Language:Shell 5
SalomonSmeke / dotfiles
💾
dotfiles dotfiles-install zsh config configuration-management antibody macos
Language:Shell 5

antibody

getantibody / antibody

milaboratory / mixcr

slowkow / awesome-vdj

mikessh / vdjtools

Merck / BioPhi

mikessh / migmap

Genentech / walk-jump

immunomind / covid19

mikessh / migec

Merck / Sapiens

xinyu-dev / annotate_v

bobsoppe / zsh-ssh-agent

gf712 / AbPyTools

haddocking / HADDOCK-antibody-antigen

frankroeder / dotfiles

alchemab / parapred-pytorch

BEAM-Labs / BALM

snijderlab / stitch

0-vortex / dotfiles

bushidocodes / dotfiles

mit-ll / AlphaSeq_Antibody_Dataset

brandonsie / epitopefindr

colbyford / SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions

Terkild / CITE-seq_optimization

TobiasHeOl / kasearch

adhamu / dotfiles

cognano / AVIDa-hIL6

krdav / SPURF

prescient-design / walk-jump

kevinmicha / ANTIPASTI

markosamuli / dotfiles

yjcyxky / antibody-dl

arsham / dotfiles

jrwrigh / dotfiles2.0

longpdo / dotfiles

SalomonSmeke / dotfiles