antibody
There are 4 repositories under antibody topic.
- Language:Go 1679
milaboratory / mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
Language:Kotlin 374- awesome-vdj
slowkow / awesome-vdj
đź“š Tools and databases for analyzing HLA and VDJ genes.
Merck / BioPhi
BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluation (OASis) and an interface for computer-assisted antibody sequence design.
Language:Python 177mikessh / vdjtools
[REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data
Language:Groovy 135- Language:Python 108
- Language:Jupyter Notebook 54
- Language:Python 53
- Language:Groovy 52
prescient-design / walk-jump
Official repository for discrete Walk-Jump Sampling (dWJS)
Language:JavaScript 51immunomind / covid19
🦠Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
- Language:Groovy 41
frankroeder / dotfiles
$HOME of my ~/.dotfiles (macOS & Linux)
Language:Shell 31xinyu-dev / annotate_v
Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
Language:Jupyter Notebook 29bobsoppe / zsh-ssh-agent
Ssh-agent management for zsh
Language:Shell 27- Language:Python 25
kevinmicha / ANTIPASTI
ANTIPASTI (ANTIbody Predictor of Affinity from STructural Information) is a Deep Learning model that predicts the binding affinity of antibodies from their three-dimensional structure.
Language:Jupyter Notebook 25- Language:Python 24
haddocking / HADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocol
Language:Python 22- stitch
snijderlab / stitch
Template-based assembly of proteomics short reads for de novo antibody sequencing and repertoire profiling
Language:C# 22 mit-ll / AlphaSeq_Antibody_Dataset
Dataset with quantitative binding scores of scFv-format antibodies against SARS-CoV-2 target peptide
alchemab / parapred-pytorch
PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)
Language:Python 19yjcyxky / antibody-dl
A Collection of Platform, Tools, and Resources for Antibody Engineering
Language:Python 19brandonsie / epitopefindr
R package to BLAST peptide sequences against each other and identify the minimal overlap of aligning regions.
Language:R 16bushidocodes / dotfiles
Dotbot managed dotfiles for a polyglot dev using WSL. Includes PowerShell stuff for Windows Installation
Language:Shell 16cognano / AVIDa-hIL6
Code for NeurIPS 2023 paper "AVIDa-hIL6: A Large-Scale VHH Dataset Produced from an Immunized Alpaca for Predicting Antigen-Antibody Interactions"
Language:Jupyter Notebook 16- dotfiles-dotbot
0-vortex / dotfiles-dotbot
A utility first dev tooling repo with dotbot, zsh, antibody, defaults, pkgsrc, plist, fonts, git-extras, git-quick-stats, atom, pip, npm, cargo, go, karabiner, carpalx full optimization.
Language:Shell 15 Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"
Language:Python 12colbyford / SARS-CoV-2_B.1.1.529_Spike-RBD_Predictions
AlphaFold2 and RoseTTAFold predictions of the SARS-CoV-2 B.1.1.529 variant Spike protein with HADDOCK antibody interactions
Language:Jupyter Notebook 12TobiasHeOl / kasearch
KA-Search: Rapid and exhaustive sequence identity search of known antibodies
Language:Jupyter Notebook 11AstraZeneca / SelfPAD
The official implementation of "Improving Antibody Humanness Prediction using Patent Data".
Language:Python 9Terkild / CITE-seq_optimization
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
Language:R 9- Language:Shell 8
- Language:Python 8
- Language:Shell 7
- PD-1_Fab_Diffusion
tuplexyz / PD-1_Fab_Diffusion
PD-1 Targeted Antibody Discovery Using AI Protein Diffusion
Language:Shell 7
