cytometry
There are 0 repository under cytometry topic.
whitews / FlowKit
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
Language:Python 157- Language:R 63
- Language:Python 40
- Language:Python 38
MICS-Lab / scyan
Biology-driven deep generative model for cell-type annotation in cytometry. Scyan is an interpretable model that also corrects batch-effect and can be used for debarcoding or population discovery.
Language:Python 33LCSB-BioCore / GigaSOM.jl
Huge-scale, high-performance flow cytometry clustering in Julia
Language:Julia 31- Language:R 25
- Language:Python 25
keyes-timothy / tidytof
An R package for analyzing high-dimensional cytometry data using the tidyverse.
Language:R 19ghar1821 / Chronoclust
A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.
Language:Python 15FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow community.
Language:Python 14gszep / FlowAtlas.jl
an interactive explorer for flow cytometry data
Language:JavaScript 11- Language:PHP 11
- Language:R 9
Terkild / CITE-seq_optimization
Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments
Language:R 9BodenmillerGroup / histocat-web
Histology Topography Cytometry Analysis Toolbox (histoCAT) for Web.
Language:Vue 8casanova-lab / iMUBAC
Integration of multi-batch cytometry datasets
Language:R 8Temporal clustering and tracking algorithm which fuses on FlowSOM and ChronoClust, specifically designed for analysing temporal cytometry data
Language:R 8TAPE-Lab / CyGNAL
Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.
Language:Python 7- Language:Jupyter Notebook 7
CIDARLAB / fpSelection
Algorithms for the selection of fluorescent reporters.
Language:Java 6luglilab / Cytophenograph
Pipeline for flow cytometry anlaysis
Language:Python 5- Language:Python 5
ZELLMECHANIK-DRESDEN / ShapeOut
Shape-Out has been superseded by Shape-Out 2.
Language:Python 5- Language:R 4
gitdemont / IFCshiny
An R Interactive Shiny Application for the Analysis of Imaging and Conventional Flow Cytometry
Language:R 4matei-ionita / HiTMapper
An R package for visualization and relational analysis of cell states, based on the Mapper algorithm from topological data analysis.
Language:C++ 4- Language:C++ 3
- Language:R 3
- Language:R 3
- Language:Jupyter Notebook 3
- Language:R 2
JimboMahoney / CytobankGraphs
R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank
Language:R 2lance-waller-lab / gateR
Flow/Mass Cytometry Gating via Spatial Kernel Density Estimation
Language:R 2- Language:Java 2
scivision / cytometry-ratios
Open source static cytometry, initially targeting P. falciparum malaria
Language:Python 2
