Oxford Protein Informatics Group

ANARCI

Antibody Numbering and Antigen Receptor ClassIfication

ImmuneBuilder

Predict the structure of immune receptor proteins

AbLang

AbLang: A language model for antibodies

AntiFold

Improved antibody structure-based design using inverse folding

DEVELOP

CaLM

Protein language model trained on coding DNA

Graphinity

Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity

DeepCoy

AbLang2

An antibody-specific language model focusing on NGL prediction

PLAbDab

The Patent and Literature Antibody Database (PLAbDab): an evolving reference set of functionally diverse, literature-annotated antibody sequences and structures

MolSnapper

kasearch

KA-Search: Rapid and exhaustive sequence identity search of known antibodies

SPACE2

Tool for rapid clustering of antibody models by the structure of their CDRs.

AEV-PLIG

CoPriNet

Deep learning for compound price prediction

Fragmenstein

Merging, linking and placing compounds by stitching bound compounds together like a reanimated corpse

Humatch

Fast, gene-specific joint humanisation of antibody heavy and light chains.

ECFP-Sort-and-Slice

Sort & Slice: A Simple and Superior Alternative to Hash-Based Folding for Extended-Connectivity Fingerprints (ECFPs)

SCALOP

p-IgGen

p-IgGen: A Generative Paired Antibody Language Model

binding-sites

Tz_her2_affinity_and_beyond

Design and refine high affinity antibody libraries

ITsFlexible

Prediction of Antibody CDR and protein loop flexibility

OAS-CanonicalForms

Code to perform clustering of antibody CDRs from predicted structures of sequences from the Observed Antibody Space.

sdAbs_vs_Abs

A comparison of the binding sites of antibodies and single-domain antibodies

cesped

Cryo-EM Supervised Pose Estimation Dataset utilities

molecular_rectifier

Given an RDKit molecule that does not sanitise, correct it until it does

Protein-Ligand-Interaction-Graphs

Python_SmallWorld_API

An (unofficial) Python3 module to query the SmallWorld chemical space search server (https://sw.docking.org/search.html)

rdkit_to_params

Create or modify Rosetta params files (topology files) from scratch, RDKit mols or another params file