rep-seq

There are 0 repository under rep-seq topic.

milaboratory / mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
bioinformatics immunology antibody t-cell-receptor t-cell rep-seq 10x rna-seq sequencing single-cell
Language:Kotlin 312
immunomind / immunarch
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
immunology tcr tcr-repertoire immunoinformatics immune-repertoire rep-seq bcr-repertoire bcr ig ig-repertoire bioinformatics immune-repertoire-data immune-repertoire-analysis t-cell-receptor b-cell-receptor immunoglobulin repertoire-analysis airr-analysis single-cell single-cell-analysis
Language:R 291
mikessh / vdjtools
Post-analysis of immune repertoire sequencing data
antibody bioinformatics immunology rep-seq repertoire stat t-cell t-cell-receptor
Language:Groovy 125
mikessh / migmap
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
antibody bioinformatics immunology ngs rep-seq sequencing t-cell t-cell-receptor
Language:Groovy 50
immunomind / covid19
🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) data of COVID-19 patients with SARS-CoV-2.
covid-19 covid-19-data sars-cov-2 t-cell antibody rep-seq immune-repertoire-data single-cell-data scrna-seq-data airr-analysis bioinformatics immunoinformatics computational-immunology
42
mikessh / migec
A RepSeq processing swiss-knife
adapter antibody bioinformatics immunology ngs rep-seq sequencing umi
Language:Groovy 41
antigenomics / vdjmatch
⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
bioinformatics rep-seq t-cell antigen vdjdb
Language:Groovy 36
antigenomics / vdjviz
⚙️ A lightweight immune repertoire browser
bioinformatics web browser immunology rep-seq
Language:JavaScript 27
uio-bmi / compairr
Comparison of Adaptive Immune Receptor Repertoires
immune-repertoire airr bioinformatics immunology repertoire-analysis immunoinformatics rep-seq
Language:C++ 24
krdav / SPURF
Substitution Profiles Using Related Families
substitution-profile bcr b-cell antibody rep-seq
Language:Python 8
snaketron / ClustIRR
Clustering of immune receptor repertoires
b-cell-receptor clustering quantitative-methods repertoire-analysis t-cell-receptor bioinformatics immunoinformatics immunology rep-seq
Language:R 2
yana-safonova / cattle_rep_seq
Browser of clonal trees showing evolutionary development of antibodies with ultra-long CDR3s in 50 cattle individuals
immunoinformatics immunology rep-seq visualization
1
swanson-lab / VH12-Sequencing
Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".
ngs ngs-analysis ngs-pipeline transgene rep-seq b-cell-receptor b-cell vdj-recombination immcantation immunology r mus-musculus
Language:R 0
mikessh / homebrew-repseq
Immune repertoire sequencing data analysis packages for Linux/MacOS.
homebrew linuxbrew rep-seq
Language:Ruby

rep-seq

milaboratory / mixcr

immunomind / immunarch

mikessh / vdjtools

mikessh / migmap

immunomind / covid19

mikessh / migec

antigenomics / vdjmatch

antigenomics / vdjviz

uio-bmi / compairr

krdav / SPURF

snaketron / ClustIRR

yana-safonova / cattle_rep_seq

swanson-lab / VH12-Sequencing

mikessh / homebrew-repseq