AstraZeneca

onto_merger

OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes that represent the same domain.

jazzy

Fast calculation of hydrogen-bond strengths and free energy of hydration of small molecules.

KAZU

Fast, world class biomedical NER

kallisto

Efficiently calculate 3D-features for quantitative structure-activity relationship approaches.

runnable

Runnable

kgem-in-drug-discovery

Code to accompany the "Understanding the Performance of Knowledge Graph Embeddings in Drug Discovery" manuscript (Artificial Intelligence in the Life Sciences, 2022)

napari-wsi

A plugin to read whole slide images within napari.

peptide-tools

Programs to calculate phys-chem properties of synthetic peptides and proteins: isoelectric point and extinction coefficients.

biomedical-kg-topological-imbalance

Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022)

roo

A package and environment manager for R

ConvCaps-DR

Tensorflow-Keras implementation of deep Convolutional Capsule Networks with Dynamic Routing algorithm

MVDA_exploration_tools

Multivariate data analysis (MVDA) exploration tool is a Python library utilizing the scikit-learn library for partial least squares (PLS) and principal components analysis (PCA).

SelfPAD

The official implementation of "Improving Antibody Humanness Prediction using Patent Data".

maraca

R package for the creation of "maraca" plots

Machine-Learning-for-Predicting-Targeted-Protein-Degradation

The code was developed for training diverse ML and DL models to predict PROTACs degradation. Data cleaning for two public datasets, PROTAC-DB and PROTACpedia, are also included. PROTACs are of high interest for all disease areas of AZ and thus predicting their degradation is of general interest.

MCPL

Official implementation for "An image is worth multiple words: discovering object level concepts using multi-concepts prompts learning" [ICML 2024]]

qscheck

An R library to perform assertions and decision on input arguments.

adhce

dpp_imp

Improved clinical data imputation via classical and quantum determinantal point processes

trim21-bioprotac

Bioinformatics data analyses - Fletcher A. et al., Nature Communications 2023, doi: 10.1038/s41467-023-42546-2

arrayedCRISPRscreener

The goal of arrayedCRISPRscreener is to simulate arrayed CRISPR screening data for the purpose of benchmarking data analysis tools as well as power calculation.

CKD_molecular_stratification

mcpl.github.io

metabolic_classifier

multimodal-python-course

The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science

persist-seq-galaxy-tools-setup

qsuse

R library that provides an import mechanism like python to import local source files. It is not meant to replace library(), or doublecolon:: prefixing

reactive6

Reactive R6 models for Shiny

safeenv

Safe R environment that raises an error if a key has never been defined, instead of returning NULL

verbReduce