tcr

There are 0 repository under tcr topic.

• immunomind / immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

  immunologytcrtcr-repertoireimmunoinformaticsimmune-repertoirerep-seqbcr-repertoirebcrigig-repertoirebioinformaticsimmune-repertoire-dataimmune-repertoire-analysist-cell-receptorb-cell-receptorimmunoglobulinrepertoire-analysisairr-analysissingle-cellsingle-cell-analysis
  Language:R 295
• awesome-vdj

  slowkow / awesome-vdj

  📚 Tools and databases for analyzing HLA and VDJ genes.

  bioinformaticsimmunologyantibodyt-cell-receptorhla-databasehla-typingb-cell-receptorawesome-listhlabcrtcrvdj
  189

• sidhomj / DeepTCR

  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

  deep-learningrepertoiretcradaptive-immunityimmunologytcr-repertoire
  Language:Jupyter Notebook 109

• houseofcat / turbocookedrabbit

  A user friendly RabbitMQ library written in Golang.

  golangrabbitmqcookedrabbittcrgo
  Language:Go 107

• miguelmota / awesome-token-curated-registries

  Curated list of awesome Token Curated Registry (TCR) resources.

  token-curated-registrycurated-registriestcrcuration-marketsethereumblockchainsmart-contractssoliditycurationawesome
  72
• immuneML

  uio-bmi / immuneML

  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

  machine-learning-analysisadaptive-immune-receptorsairrclassificationbenchmarkingtcrbcrimmune-repertoire
  Language:Python 58
• stitchr

  JamieHeather / stitchr

  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info

  tcrbioinformatics-toolimmunology
  Language:Python 49

• gautamdhameja / substrate-tcr

  A Parity Substrate runtime implementation of a simple Token Curated Registry (TCR)

  parity-substratetcrtoken-curated-registryruntimeblockchaincrypto
  Language:Rust 47
• FrameDiPT

  instadeepai / FrameDiPT

  FrameDiPT: an SE(3) diffusion model for protein structure inpainting

  alphafold2diffusion-modelsgenerative-modelinpaintingloop-designprotein-foldingprotein-structuretcr
  Language:Jupyter Notebook 46

• wukevin / tcr-bert

  Large language modeling applied to T-cell receptor (TCR) sequences.

  bertmachine-learningtcr
  Language:Jupyter Notebook 43

• pengxingang / TEIM

  TEIM: TCR-Epitope Interaction Modeling

  deep-learningtcrtcr-epitope
  Language:Python 42

• islomar / tcr-workshop

  Information and instructions for trying TCR workflow (test && commit || revert)

  tddtcrcoding-dojosoftware-crafters
  Language:Ruby 39

• imminfo / tcr

  [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.

  immunoinformaticsimmunologytcrdata-analysisigtcr-repertoireig-repertoirebioinformaticsbioinformatics-analysis
  Language:R 36

• fajrinard / Line-TCR

  Line Bot TCR

  bot-tcrpythontcr
  Language:Python 24

• nec-research / vibtcr

  Code for "Attentive Variational Information Bottleneck for TCR-peptide Interaction Prediction", Grazioli et al., Bioinformatics 2022

  attentioninformation-bottlenecktcrbinding-predictionbioinformatics
  Language:Jupyter Notebook 22

• GuoBioinfoLab / CATT

  An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.

  tcrtcr-repertoirebioinformaticsbioinformatics-tool
  Language:Julia 18

• gautamdhameja / substrate-tcr-ui

  A react.js frontend for Substrate TCR runtime.

  tcrsubstrateparity-substratepolkadotblockchain
  Language:JavaScript 15

• immunogenomics / TiRP

  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm. (2022)

  tcrtregmixed-effects-modelssequence-analysissingle-cell
  Language:Jupyter Notebook 11

• joejag / tcr

  Get going with 'test && commit || revert' in seconds

  tcrnodejstddreactnode-jsnpx
  Language:JavaScript 11

• unmade / cyprety-rental-bot

  This is backend for CYRentBot

  pythontelegramtelegram-botaiohttpaiosqliteaiogramtcrclean-codecirclecimypy
  Language:Python 9

• yutanagano / sceptr

  Simple Contrastive Embedding of the Primary sequence of T cell Receptors

  contrastive-learningprotein-language-modeltcrtcr-repertoirebioinformaticsimmunoinformaticsimmunologytransformer
  Language:Python 9

• akds / BASIC

  BASIC: BCR and TCR assembly from single cell RNA-seq

  scrna-seqbcrtcrimmune-repertoiresingle-cell
  Language:Python 8

• GuoBioinfoLab / TCRdb

  A database of T-cell receptor sequences

  tcrtcr-repertoiredatabasebioinformatics
  Language:Python 8

• antigenomics / tcr-pmhc-study

  Mining TCR:pMHC structural data

  bioinformaticspdbantigenmhctcrstructures
  Language:Python 5

• arigatodl / uber-ethereum

  Decentralized uber-like system on ethereum

  ethereumsolidityweb3nodejstcruber-ethereum
  Language:JavaScript 5

• gautamdhameja / bigchaindb-tcr

  A simple Token Curated Registry implementation based on BigchainDB.

  token-curated-registrybigchaindbblockchaintcrcurated-lists
  Language:JavaScript 5

• pjsample / TCR-Epitope_Modeling

  Modeling the binding of CDR3 sequences to epitopes.

  tcelltcrcdr3tcr-epitope
  Language:Python 5

• aislyn / TCR_circos

  R function to generate a circos-style ggplot from single-cell TCR data.

  tcrsinglecellcircosggplot2plotimmunogenomics
  Language:R 4

• bandprotocol / whitepaper-legacy

  📜 [DEPRECATED] Whitepaper v1.0 - v2.0 of Band Protocol

  bandprotocolblockchainwhitepapertcr
  Language:TeX 4
• submarine-tcr

  les-tontons-crafters / submarine-tcr

  TCR kata repository for the Software Craft Luxembourg Community Autumn Camp 2022

  katatddcsharpjavatcr
  Language:Gherkin 4

• lianekof / Chivas-TCR

  LIN3-TCR / CHIVAS

  botlinechivastcrlin3-tcrbots
  Language:Python 4

• nec-research / tc-hard

  Experiments for "On TCR Binding Predictors Failing to Generalize to Unseen Peptides", Grazioli et al., Frontiers in Immunology 2022

  bioinformaticsdeep-learningepitopesimmunologytcr
  Language:Jupyter Notebook 4

• yutanagano / tidytcells

  Standardise TR/MH data

  bioinformaticsdata-cleaningimmunoinformaticsimmunologystandardizationt-cell-receptormajor-histocompatibility-complexmhmhctcrtrbioinformatics-tool
  Language:Python 4

• dyohanne / RepAn

  Analysis functions for deep sequenced immune repertoire (Repseq) datasets in R

  immunoinformaticsdifferential-abundance-analysestcr-repertoiretcrtcrbbioinformaticsbioinformatics-pipelinerepseq
  Language:R 3

• mattfemia / iedb-python

  Python SDK for Immune Epitope Database (IEDB) Analysis Tools API

  immunoinformaticsimmunologyt-celltcr
  Language:Python 3

• pwwang / immunopipe-example

  An example of immunopipe

  immunotherapyseuratsingle-cell-analysissingle-cell-rna-seqtcrtcr-repertoire
  Language:HTML 2