antibodies

There are 0 repository under antibodies topic.

• oxpig / AbLang

  AbLang: A language model for antibodies

  antibodieslanguage-modelprotein-sequencessemantic
  Language:Python 110

• xinyu-dev / annotate_v

  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python

  antibody-numberingantibodyantibodiesantibody-annotationchothiaannotation-schemeimgt
  Language:Jupyter Notebook 25

• bayer-science-for-a-better-life / topefind-public

  Finding the pitfalls of deep learning predictors of interacting residues in antibodies 🦠

  antibodiesartificial-intelligencebiologydeep-learningneural-networkprotein
  Language:Python 22

• epiverse-trace / serofoi

  Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

  rr-packagestan-languageepidemiologybayesian-methodsserological-surveysantibodiesepiverse
  Language:R 16

• TobiasHeOl / AbLang

  AbLang: A language model for antibodies

  antibodieslanguage-modelsemanticssequences
  Language:Python 15

• DABAKER165 / pepMeld

  Peptide Microarray Workflow. Python, open-source

  peptide-sequencingimmune-systemantibodiesepitope-discoveryinstrumentationmhc-binding-prediction
  Language:Python 3

• seroanalytics / serosim

  An R package for simulating serosurvey data using custom models for the data-generating process

  antibodiesinfectious-disease-epidemiologyserological-surveysserologysimulation-frameworkserosurvey
  Language:R 3

• Bdegraaf1234 / FabLab

  Integrated LC-MS/MS-based de novo sequencing of antibody chains in complex mixtures

  antibodiesmass-spectrometrysequencingmiddle-down
  Language:C# 2

• lin-justin / cafe

  Classifying Antibodies for Expression

  antibodiesbioinformaticsclassificationmachine-learningpythonsupervised-learning
  Language:Python 2

• msuprun / bbeaR

  An R package and framework for epitope-specific antibody profiling for the data obtained with the Bead-Based Epitope Assay (BBEA)

  allergyantibodiesepitopeluminex
  Language:R 2

• tAndreani / scBCR

  Benchmarking computational methods for B cell receptor reconstruction from single cell RNA-seq data

  benchmarkantibodiessingle-cell-rna-seqb-cell-receptorpersonalized-medicine
  Language:R 2

• xinyu-dev / hopp-woods

  Prediction of hydrophilicity & antigenic determinants from protein sequences

  antibodiesantibodyprotein-hydrophilicity
  Language:Jupyter Notebook 2

• ahmedaq / HCV-E2

  Software for in silico identification of immunologically-vulnerable regions of the HCV E2 glycoprotein and broadly neutralizing antibodies that target them

  hcv-e2matlabvaccinevaccine-designimmunogenantibodiesbroadly-neutralising-antibodieshcve2glycoprotein
  Language:MATLAB 1

• FabianTraxler / ag_binding_affinity

  Code repository for Master Thesis "Antibody-antigen binding affinity prediction through the use of geometric deep learning"

  antibodiesgraph-neural-networksmachine-learningpytorch
  Language:Jupyter Notebook 1

• i6092467 / t-cells-response-sars-cov-2

  Code and data for the ML analysis of humoral and cellular responses to SARS-CoV-2

  antibodiesmachine-learningneutralizing-antibodiessars-cov-2t-cells
  Language:Jupyter Notebook 1

• cembrowskilab / proteinsearch.py

  An automated web search for human antibodies labelling neurons and glia in the brain. Takes the direct output of Seurat's "FindMarkers()" and returns a data frame of antibodies based on information from the human protein atlas.

  antibodieshistologyscrna-seqsnrna-seqtranscriptomics
  Language:Python 0

• icghita / ANNAVP

  Learning the Relationship between the Primary Structure of HIV Envelope Glycoproteins and Neutralization Activity of Particular Antibodies by Using Artificial Neural Networks

  antibodiesartificial-neural-networkshivhiv-envelope-glycoproteinsneutralization-activity
  Language:MATLAB 0

• mvboven / cmv-serology

  data and scripts of CMV cross-sectional serological study

  antibodiesmathematicaserologystanrstantransmission
  Language:Mathematica 0

• ZarnitsynaLab / ArielNikas-HumoralMemoryEnhancingInfection

  Code and data associated with the paper 'When does humoral memory enhance infection?' to be published in Plos Computational Biology

  antibodiesantibody-dependent-enhancementdenguehumoral-memoryimmunologyode-model
  0
• mab-libs

  wjs20 / mab-libs

  Working with in-silico antibody libraries

  antibodiesbioinformaticsdrug-discoverypythonsynthetic-biology
  Language:Python