Mikhail Shugay's repositories
repseq-tutorial
Rep-Seq data analysis tutorial
vdjtools-examples
A set of real-world RepSeq datasets used for testing the VDJtools software
igblast-bin
IgBlast v1.4.0 binaries dump for homebrew, etc. Please refer to official web page
mageri-paper
Data and post-analysis for MAGERI project
aging-study
Metadata and some analysis for the T-cell repertoire aging study
duplicates
Analysis of duplicate reads in Illumina sequencing
exome-misc
Miscellaneous tools for exome-seq: annotating SNP, counting molecules on start, etc
vdjtools-doc
THIS REPOSITORY IS DEPRECATED, FOR ISSUE TRACKER GO TO
homebrew-repseq
Immune repertoire sequencing data analysis packages for Linux/MacOS.
seqcliutil
Some basic utils for operating FASTA files
vdj-standard
Tool suite for parsing V(D)J alignment results and produce AIRR standard format