b-cell-receptor

There are 2 repositories under b-cell-receptor topic.

• immunomind / immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

  immunologytcrtcr-repertoireimmunoinformaticsimmune-repertoirerep-seqbcr-repertoirebcrigig-repertoirebioinformaticsimmune-repertoire-dataimmune-repertoire-analysist-cell-receptorb-cell-receptorimmunoglobulinrepertoire-analysisairr-analysissingle-cellsingle-cell-analysis
  Language:R 292
• awesome-vdj

  slowkow / awesome-vdj

  📚 Tools and databases for analyzing HLA and VDJ genes.

  bioinformaticsimmunologyantibodyt-cell-receptorhla-databasehla-typingb-cell-receptorawesome-listhlabcrtcrvdj
  187

• jianqingzheng / XBCR-net

  Code for "Deep learning-based rapid generation of broadly reactive antibodies against SARS-CoV-2 and its Omicron variant" (Cell Research)

  antibody-sequenceb-cell-receptordeep-learningkeras-tensorflowtensorflow
  Language:Python 28
• IgGeneUsage

  snaketron / IgGeneUsage

  Comparison of gene usage in immune repertoires under different biological conditions

  immune-repertoiresdifferential-gene-expressionhigh-throughput-sequencingimmunoinformaticsimmunological-bioinformaticsvdj-recombinationdifferential-analysistcr-repertoirebcr-repertoireb-cell-receptorimmunologyimmunoglobulinimmunogenomicsimmune-repertoireimmune-repertoire-analysis
  Language:R 6

• Magnushhoie / discotope3_web

  DiscoTope-3.0: Improved B-cell epitope prediction using AlphaFold2 modeling and inverse folding latent representations

  b-cell-receptorepitopesepitopes-prediction
  Language:Python 4

• snaketron / ClustIRR

  Clustering of immune receptor repertoires

  b-cell-receptorbioinformaticsclusteringimmunoinformaticsimmunologyquantitative-methodsrep-seqrepertoire-analysist-cell-receptor
  Language:R 2

• tAndreani / scBCR

  Benchmarking computational methods for B cell receptor reconstruction from single cell RNA-seq data

  benchmarkantibodiessingle-cell-rna-seqb-cell-receptorpersonalized-medicine
  Language:R 2

• snaketron / IgStats

  Suit of statistical procedures for robust quantification of various BCR and TCR repertoire properties

  b-cell-receptorimmune-repimmune-repertoireimmune-repertoire-analysisimmunoinformaticsimmunological-bioinformaticsimmunologyt-cell-receptor
  Language:R 1

• swanson-lab / VH12-Sequencing

  Code and scripts used for Worth et al. 2022: "Receptor editing constrains development of phosphatidyl choline-specific B cells in VH12-transgenic mice".

  ngsngs-analysisngs-pipelinetransgenerep-seqb-cell-receptorb-cellvdj-recombinationimmcantationimmunologyrmus-musculus
  Language:R 0