Xin Yu's repositories
annotate_v
Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
cas-covid-mab-tracker
Python script using API of ClincialTrials.gov to retrieve therapeutic antibodies for the COVID-19 Antibody Tracker of the Chinese Antibody Society. Tracker: https://chineseantibody.org/covid-19-track/
TransMHCII
Code repository for manuscript: TransMHCII: a novel MHC-II binding prediction model built using a protein language model and an image classifier
alphafold_installation
The following is a step-by-step guide to install the alphafold 2 on an AWS EC2 Ubuntu instance
cas-collaboration
Collaborative projects for the Chinese Antibody Society
hopp-woods
Prediction of hydrophilicity & antigenic determinants from protein sequences
annotate_v-for-Pymol
Antibody Annotation - Annotate antibody VH and VL sequences (FR and CDR) in Pymol
bionemo-demo
Demo & tip for using BioNeMo
bvp_manuscript
Code for BVP manuscript
country-json
A simple data of the world by country each in JSON format.
general-image-processing
A collection of Python scripts for batch-processing images and facial recognition. 1) “Logo Resizer”: dynamically resizes images to fit bounding box. 2) “Headshot Cropper”: identifies faces using CV2, then extracts faces into round thumbnail images and resizes them. 3) “Volunteer Certificate”: reads data from CSV, dynamically resizes text to fit bounding box, then applies text style, and outputs image as pdf
Pymol-script-repo
Collected scripts for Pymol
signal_peptide_mutagensis
repository for signal peptide mutagenesis paper
antibody-csv-to-html
Javascript to convert antibody information from csv tables to html pages
cas-analytics-dashboard
An analytics dashboard built using Plotly Dash (Python) for data visualization of Chinese Antibody Society's multimedia platforms.
interactive-datatable
Simple implementation of a responsive, interactive data table using jquery, dataTables.js, and bootstrap. https://xinyu-dev.github.io/interactive-datatable/
MHCI-A0201-9mer
Benchmarking MHC-I epitope prediction algorithms ( IEDB ANN, MHCFlurry, and NetMHCpan-BA) in prediction of high affinity (IC50 < 500 nM) 9-mer binders to human MHC-I HLA-A02:01.
plotly.py
An open-source, interactive graphing library for Python (includes Plotly Express) :sparkles:
swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.
world.geo.json
Annotated geo-json geometry files for the world
xinyu-dev.github.io
main webpage - current under development