imagej-plugin

There are 1 repository under imagej-plugin topic.

UU-cellbiology / ZstackDepthColorCode
Z-stack Depth Colorcode ImageJ FIJI plugin
imagej-plugin colorcode fiji imagej fiji-plugin microscopy utrecht-university
Language:Java 21
vanTeeffelenLab / ExTrack
ExTrack MLE for diffusive noisy single-particle tracks
diffusion image-analysis imagej-plugin maximum-likelihood-estimation microscopy python single-particle-tracking spt
Language:Jupyter Notebook 12
multifrac
$multifrac$ ivangtorre / multifrac
This is a plugin for ImageJ2 for multifractal analysis of 2D and 3D images. Cite: MULTIFRAC: An ImageJ plugin for multiscale characterization of 2D and 3D stack images . IG Torre, R. J. Heck and AM Tarquis. SoftwareX, 12, 100574.
multifractal-analysis imagej-plugin imagej 3d-images java fractal multifractal
Language:Java 8
CiliaQ
hansenjn / CiliaQ
An ImageJ plugin to quantify ciliary shape, length, and fluorescence.
ciliaq-workflow imagej-plugin cilium cilia primary-cilia cilium-length ciliary-fluorescence time-lapse-imaging confocal-images fluorescence-microscopy-imaging imagej-plugins
Language:Java 6
GReD-Clermont / omero_batch-plugin
omero imagej imagej-plugin imagej-macros
Language:Java 5
UU-cellbiology / Correlescence
spatial and temporal cross correlations in 1D and 2D for fluorescent microscopy (ImageJ plugin)
imagej stacks fiji fiji-plugin imagej-plugin cross-correlation microscopy utrecht-university
Language:Java 5
DIDSR / BoneJ_Headless
Scripts for executing Fiji plugin BoneJ in headless mode in Python to compute bone microstructure metrics
imagej python image-processing bone-morphological-analysis fiji fiji-plugin imagej-plugin
Language:Python 4
hansenjn / AdipoQ
A simple toolbox of ImageJ plugins for quantifying adipocyte morphology and function in tissues and in vitro.
adipocyte-differentiation adipocytes adipose-tissue adipose-tissue-segmentation cell-biology fluorescence-microscopy-imaging image-analysis imagej-plugin immunohistochemical-images droplet-analysis droplets-detection lipid-droplets
4
hansenjn / MultifocalImaging-AnalysisToolbox
A toolbox to analyze spherical and filamentous objects in multifocal images with high speed and high precision.
spermq-mf java imagej-plugin multifocal-images sperm flagella fluid-dynamics particle-tracking 3d-particle-tracking high-speed-imaging particle-imaging-velocimetry 3d-particle-imaging-velocimetry flagellar-beat sperm-tracking sperm-steering
Language:MATLAB 4
SpermQ
hansenjn / SpermQ
An ImageJ plugin to analyze the flagellar beat of sperm, motile cilia beat, and sperm steering.
imagej-plugin sperm-steering spermq-analysis sperm-tracking flagella flagellar-beat ciliary-motion ciliary-beat
Language:Java 4
L-EL / TreeJ
Fiji/ImageJ plugin to annotate a labeled image
fiji fiji-plugin imagej imagej-plugin labeled-images tree-structure
Language:Java 3
bruvellu / WormBox
Fiji/ImageJ plugin to help measuring linear distances.
fiji fiji-plugin image-processing imagej imagej-plugin morphology python
Language:Python 2
berdal84 / Mageek-Java
Mageek is an ImageJ Java plugin to batch process microscope images
java imagej2 imagej-plugin
Language:Java 1
ishibaki / awesome-imagej-plugins
😎 Awesome lists about ImageJ Plugins!
imgaej fiji fiji-plugin imagej-plugins imagej-plugin awesome-list awesome
1
Turku-BioImaging / ColonyArea
ImageJ-plugin that is optimized to perform standard analysis of colony formation assays conducted in 6- to 24-well dishes.
imagej imagej-plugin image-processing cell-biology fiji fiji-plugin
Language:ImageJ Macro 1
amatov / AutomatedBlotQuantification
imagej-plugin western-blot active-contour image-segmentation automated-blot-quantification computer-vision-opencv computer-vision-algorithms image-analysis-and-processing imagej-roi c-sharp javascript image-intensity-thresholding connected-components-labeling northern-blot southern-blot digital-blot protein-level-quantification quantitative-analysis object-detection wavelet-transform
Language:Java 0
FreQ
hansenjn / FreQ
An ImageJ plugin to analyze pixel intensity oscillations in time-lapse 2D images. For example, this allows to characterize the ciliary beat of multi-ciliated cells in time-lapse images acquired with a bright-field or phase-contrast microscope.
imagej-plugin ciliary-beat-frequency image-analysis timelapse-image
Language:Java 0
ijtools / sliding-strel
Morphological dilation and erosion using sliding structuring elements
imagej-plugin mathematical-morphology morpholibj morphological-filtering morphological-image-processing
Language:Java 0
brandon-hastings / Lumeleon
Package for animal pattern analysis, with machine learning for MICA Toolbox (beta)
bounding-boxes coloration imagej-plugin machine-learning segmentation
Language:Python
hansenjn / CiliaQ_Preparator
An ImageJ plugin to prepare images for analysis using CiliaQ.
imagej-plugin imagej-plugins ciliaq-workflow
Language:Java
hansenjn / ExtractSharpestPlane_JNH
ExtractSharpestPlane_JNH is an ImageJ/FIJI plugin to automatically extract the sharpest plane by highest SD from image stacks for large data sets.
imagej-plugins imagej-plugin fiji-plugin microscopy-images z-stack image-stacks zeiss-czi-files
Language:Java
ijtools / ijLabelMapToPolygons
ImageJ plugin that converts regions from label maps into polygons
imagej imagej-plugin label-to-roi labelmap labels roi
Language:Java
swharden / PrairieView-Quick-Loader
ImageJ plugin to quickly load multiphoton imaging data from PrairieView folders
fluorescence fluorescence-microscopy-imaging imagej imagej-plugin microscopy multiphoton
Language:Java