stephenturner

annotables

R data package for annotating/converting Gene IDs

biorecap

Retrieve and summarize bioRxiv preprints with a local LLM using ollama

Tverse

Meta package that installs my most commonly used packages

devnotes

Random programming notes and orphan scripts

repo2txt

Web-based tool converts GitHub repository contents into a single formatted text file

monthsheets

lifeweeks

Visualize your life in weeks

bdsr

Biological Data Science with R

biorxivbsky

Chrome extension to share bioRxiv papers to Bluesky

dstt-rmd

CSTE DSTT RMarkdown demo

rpdd

R package Docker demo

bioinf-bloggers

A planet-like static website to track bioinformatics blogs around the world

caffeinated

Provide statistics about your caffeine level specifically when you'd be going to bed.

dsttbook

Data Science Team Training

playground_rpkg_demo

Example R package built by Positron Assistant with Claude 4 Sonnet in Agent mode

dotfiles-gitpod

Dotfiles for gitpod

fiphde

Forecasting Influenza in Support of Public Health Decision Making

genomeqc

Compare the quality of multiple genomes, along with their annotations.

mathdown

Markdown and Math Live Renderer

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nf-core-mypipeline

postcards

💌 Create simple, beautiful personal websites and landing pages using only R Markdown.

rplanes

R package to conduct plausibility analysis of epidemiological signals

rweekly.org

R Weekly

stephenturner

stephenturner.r-universe.dev

surfing-the-data-pipeline

"Surfing the Data Pipeline with Python" is a textbook that guides people through the steps of getting themselves unstuck, acquiring data, wrangling data, and exploring data.

test-datasets

Test data to be used for automated testing with the nf-core pipelines

training

Nextflow training material

webtools

Misc web tools mostly created with AI