allele-frequencies

There are 0 repository under allele-frequencies topic.

• grenedalf

  lczech / grenedalf

  Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

  pool-sequencingevolve-and-resequenceallele-frequenciespopulation-geneticspopoolationpopoolation2poolfstat
  Language:C++ 25

• Tom-Jenkins / seascape_rda_tutorial

  Tutorial for performing redundancy analysis

  rdaallele-frequenciesseascaper
  Language:R 14

• swvanderlaan / MetaGWASToolKit

  A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

  meta-analysisgwasgwas-datasetallele-frequenciesvariantsindelsgenomeassociation-studieschromosomeallele-counts
  Language:Shell 13

• ramonamerong / hladownload

  A tool for downloading HLA alleles, epitopes and frequencies

  hlaepitopeepitopesdnafrequencyallele-frequenciesalignmentmultiple-sequence-alignmentmhcallelesdownloadparserpythonpython-modulecommand-line
  Language:Python 4

• alipirani88 / samosa

  (S)train (A)ssignment from (M)etagen(O)me (S)NP (A)nalysis.

  workflowmetagenomicsvariant-callingallele-frequenciesfastq
  Language:Jupyter Notebook 3

• bailey-lab / coiaf

  Complexity of Infection Estimation with Allele Frequencies

  coicomplexity-of-infectionestimationallele-frequencies
  Language:R 3

• Hansi-Thewarapperuma / Inherited_Risk_Detector

  Identification of cancer-causing variants

  bioinformaticsannotationscancer-detectioncancer-genomicscancer-researchclinicalclinvardbnsfpdbsnpgnomadgrch37variantsacmg-guidelinesallele-frequenciesclinical-significanceconservation-scoresdiseasesfunctional-predictionhereditary-cancer-syndromepathogenic-variants
  Language:Python 3

• smail-lab-cmh / ga4k-sv-finder

  Long read structural variants in rare disease cohort

  allele-frequencieslong-readstructural-variantswgs
  Language:Python 3
• NCD-Statistics

  bbitarello / NCD-Statistics

  Code for NCD1 and NCD2 statistics to detect long-term balancing selection

  ncd-statisticsallele-frequenciessite-frequency-spectrumsfsbalancing-selection
  Language:R 2

• jeffersonfparil / poolgen

  Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

  pool-seq-datapool-sequencingquantitative-geneticsfamiliespolyploidpopulation-geneticsallele-frequenciesbioinformaticsevolutiongenomic-selectiongwasheterozygositysite-frequency-spectrumgenomic-prediction
  Language:Rust 2

• nriddiford / svSupport

  A tool to find reads supporting/opposing structural variant breakpoints

  structural-variationcancer-genomicswhole-genome-sequencingallele-frequenciestumor-heterogeneity
  Language:Python 2
• HaploDynamics

  remytuyeras / HaploDynamics

  A python library to develop genomic data simulators

  allele-frequenciesdnadna-sequencesgenomicsgenomics-datagwasgwas-datasethardy-weinberg-equilibriumlinkage-disequilibriummicroarray-datapopulation-geneticspopulation-genomicssimulationsimulatorvcfvcf-files
  Language:Python 2

• bioinf / afpaper

  Scripts and data processing notes for Russian exome sequencing AF paper

  allele-frequencieswhole-exome-sequencingrussian-specificexome-sequencing
  Language:R 1

• eliorav / Population-Genotype-Frequency

  A Python script that generate population genotype frequency file from 1000G data

  1000genomesdockerpythonallele-frequencies
  Language:Python 1

• endreth / jVCFparser

  A command-line parser for VCF files designed for population genetics analyses.

  allele-frequenciesallelesdiversity-analysisdiversity-measuresgeneticsgenotypeheterozygosityhomozygosityparsingpopulation-geneticspopulation-genomicsvcfvcf-filesvcf-formatvcfparser
  Language:Java 1

• kevin-wamae / AlleleFreqPipe

  An R script for generating allele frequencies from DNA/amino acid sequence alignments.

  allele-frequencies
  Language:R 1

• robertopreste / allfreqs

  Calculate allele frequencies from a sequence multialignment.

  bioinformaticsallele-frequenciesfastacsvpython
  Language:Python 1

• TomMakesThings / Wright-Fisher-Simulator

  Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

  allele-frequenciesdiploidhaploidlinkage-disequilibriumpopulation-geneticssimulationwright-fisher-modelbioinformatics
  Language:Jupyter Notebook 1

• aagans / ALFRED-Revival

  ALFRED Revival is an open-source project to rebuild the allele frequency database created and hosted by the Kidd Lab at Yale University. Due to a lack of ongoing support for the project, the original ALFRED has become difficult to use. ALFRED Revival is an interface utilizing modern technologies to interact with the new ALFRED Revival database.

  allele-frequenciesdatabasegeneticshuman-evolution
  Language:Python 0

• CareyMetheringham / MardenPark

  Code associated with 'Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic'

  allele-frequenciesgenomic-predictiongenomic-selectionnatural-selection
  Language:R 0

• knifecake / fafreqs

  A compilation of widely available forensic allele frequencies as an R package

  allele-frequenciesshiny-applicationspopulationgenetics
  Language:R