identity-by-descent

There are 0 repository under identity-by-descent topic.

• sunyatin / ASCEND

  Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

  allelesbottleneckdemographic-inferencedemographic-modelfounder-eventsidentity-by-descentpopulation-geneticspopulation-genomicsancient-dnademographic-history
  Language:Python 7

• a-thind / IBDVar

  A tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.

  ibd-analysisvariant-analysisidentity-by-descentvariant-annotationvariant-filteringibdwgsibisgenomicsvariantsprioritisation
  Language:Shell 4

• magnusdv / ibdsim2

  Simulate patterns of DNA sharing between pedigree members

  simulationidentity-by-descentrelatedness
  Language:R 4

• tbrunetti / GP3

  GWAS Pre-Processing Pipeline

  gwas-pipelinegwasquality-metricsquality-assurancequality-controlhardy-weinberg-equilibriumheterozygositylinkage-disequilibriumpca1000genomesminor-allele-frequencyidentity-by-descent
  Language:Python 4

• jlc-christie / plink2merlin

  Command Line Python Utility to convert from plink format to Abecasis Lab's QTDT format (used by Merlin).

  pythonpython3plinkqtdtidentity-by-descentmerlin
  Language:Python 3

• sdtemple / isweep

  Statistical inference of recent positive selection using IBD segments

  coalescentidentity-by-descentselective-sweepssnakemake-pipelines
  Language:Python 3

• bguo068 / ishare

  a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.

  ancestry-specific-ibdgenotype-dataidentity-by-descentrare-variant-sharing-analysistabular-encoding
  Language:Rust 2

• bguo068 / ibdutils

  A python package to facilitate identity-by-descent-based analysis

  identity-by-descentpythonselection-correctionposseleff-paperpositive-selection
  Language:Python 1

• bguo068 / posseleff_simulations

  Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

  effective-population-sizeidentity-by-descentpopulation-structurepositive-selectionposseleff-papertrue-ibdibd-based-inferencespopulation-genetic-simulationsnextflow-pipeline
  Language:Python 1

• magnusdv / ibdsim2-shiny

  An online tool for simulating and visualising genetic sharing (identity-by-descent) between pedigree members. Powered by the R package ibdsim2.

  identity-by-descentrelatednessforensic-geneticspedigree-analysis
  Language:R 1

• nickbrazeau / discent

  Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates

  gradient-descentidentity-by-descentspatial
  Language:C++ 1

• gmagoon / bIBD

  efficient, accurate, and scalable IBD segment detection with unphased genotype data

  identity-by-descentibdgenomicsbioinformatics
  Language:TeX 0

• rorycraig337 / Chlamydomonas_reinhardtii_population_structure

  Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"

  admixtureidentity-by-descentpopulation-geneticspopulation-structure
  Language:Perl 0

• hhuang2018 / WGS_analysis

  Exploratory analysis for donor-recipient whole genome sequences

  bioinformaticsidentity-by-descentstem-cell-transplantwhole-genome-sequencing
  Language:R