maxibor

pydamage

Damage parameter estimation for ancient DNA

sam2lca

Lowest Common Ancestor from a SAM/BAM/CRAM alignment file

comp_dnds

Measure evolutionary pressure by efficiently computing dN/dS according to the Nei-Gojobori method

adrsm

Ancient DNA Read Simulator for Metagenomic

microbiome_tutorial

Microbiome analysis tutorial

ncbi-genome-download

Python script for downloading bacterial genomes from NCBI ftp

adnamap

aDNA mapping to multiple genomes

corephylo

core genome phylogenies

DNA_tools

A set of tools to play with/analyze genomics data

pydamage_poster

poster of pydamage

AMDirT

AncientMetagenomeDir Toolkit

AMPcombi

For testing out the ampcombi tool for running amp tools.

AncientMetagenomeDir

Repository containing lists of all published ancient metagenome samples (and related)

bim

bioconda-recipes

Conda recipes for the bioconda channel.

configs

Config files used to define parameters specific to compute environments at different Institutions.

coproID

Coprolite host Identification

corecomb

Toolkit to deal with core-genome alignments recombination detection

gatsby-agora-site-template

ibis

The flexibility of Python with the scale and performance of modern SQL.

intro-to-ancient-metagenomics-book

Introduction to Ancient Metagenomics Book

mag

Assembly and binning of metagenomes

maxibor

maxibor.github.io

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

ophirofox

Une extension pour navigateurs qui permet de lire les articles du monde.fr sur son compte europresse ENS

panaroo

An updated pipeline for pangenome investigation

scihub_linker

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

uvk5-chirp-driver

Quanscheng UV-K5 radio CHIRP driver for Egzumer firmware