gc-content

There are 0 repository under gc-content topic.

showteeth / ggcoverage
Visualize and annotate genomic coverage with ggplot2
base-frequency coverage gc-content gene ggplot2 ideogram peak transcripts visualization genome-coverage track
Language:R 268
BioinfoToolbox / fqkit
🦀 Fqkit: A simple and cross-platform program for fastq file manipulation
bioinformatics fastq hts bio reads command-line-tool gc-content trim-fq demux
Language:Rust 6
manojmw / NetDNA-1.0
This is one of my first python scripts for a simple web-based tool that will generate basic information from the query DNA sequence.
dna sequence gc-content melting-temperature reverse-complement translation transcription nucleotide-sequence
Language:Python 4
TomMakesThings / Genome-Sequence-Analysis-HMM
HMM for annotating coding regions of DNA in S. cerevisiae chromosome III
hmm hidden-markov-model genome-sequence-analysis chromosome yeast computational-biology baum-welch forward-algorithm gc-content s-cerevisiae viterbi-algorithm bioinformatics
Language:Jupyter Notebook 4
danielfamiyeh / biothon
Bioinformatics library
biosequences phylogenetic-dendrograms hierarchical-cluster-analysis bioinformatics clustalw clustering fasta gc-content hirschberg multiple-sequence-alignment needleman-wunsch pairwise-alignment sequence-alignment smith-waterman transcription
Language:Python 2
jechochamber / Bachelor
Analysis on 5'UTRs based on sequence.
5-utr cnn cnn-pytorch gc-content gc-content-analysis markov-chain mfe rna-seq-analysis rna-structural-analysis uorfs
Language:Jupyter Notebook 1
JKhetia / gc-content-sliding-window
Beginner-friendly Jupyter tool to compute GC% and sliding-window profiles for DNA sequences.
bioinformatics dna gc-content genomics jupyter-notebook python sequence-analysis
Language:Jupyter Notebook 1
sam217pa / prokgc
Computes gc contents in prokaryotic genomes
bioinformatics gc-content fasta cprogramming fast
Language:C 1
Code-JL / DNA-Sequence-Analyzer
A robust Python-based bioinformatics tool for comprehensive DNA sequence analysis and manipulation.
bioinformatics biological-data computational-biology data-analysis dna-analysis dna-sequencing fasta gc-content gene-detection genetics genomics molecular-biology motif-finding python python3 scientific-computing sequence-analysis sequence-manipulation bio-tools nucleotide-analysis
Language:Python 0
DanielSoenarto / bioturtle
a Python program to calculate GC content from fasta file
fasta-sequences gc-content nucleotide-sequence python
Language:Python 0
darwinsorchid / GC-Content-Calculator
[Python] Tool for calculating GC content of nucleotide sequences with optional sliding window analysis. Sequence input options include strings and the following file formats: FASTA, FASTA Nucleid Acid, GenBank, Aligned FASTA and ClustalW.
argparse biopython fasta-files gc-content genbank-files matplotlib clustalw-files
Language:Python 0
dissipative / ribosome
The Ribosome package is a Go library designed for efficient transcription and translation of DNA and RNA sequences, inspired by the real processes in living cells.
bioinformatics dna dna-sequences gc-content ncbi protein-sequence rna sequence-analysis
Language:Go 0
lisabensoussan / DNA_lab
This project provides hands-on experience in DNA analysis using R, covering sequence manipulation, mutation analysis, GC content, fragment analysis, sequence alignment, RNA-seq, variant analysis, and phylogenetics.
dna-sequences gc-content mutation-analysis phylogenetics rna-seq-analysis sequence-alignment fragment-length
Language:HTML 0
RackS103 / Segmentation-Algorithm-Comparison
A repository for my 2020-2021 AP Research project.
isochores compositional-segmentation benchmarking compositional-domains gc-content
Language:Python 0
MarquanBow / dna-sequence-analyzer
A Python-based tool for analyzing DNA sequences: calculates GC content, reverse complements, and detects non-overlapping open reading frames (ORFs).
bioinformatics biotech dna gc-content orfs portfolio-project python sequence-analysis open-reading-frames
Language:Python
MohdFarag / GC-sliding-window-calc
Sliding window program to compute the %GC in sequence of nucleotides.
bioinformatics dna-sequences gc-content python sliding-windows
Language:Python
nawaf-Alharthi / gc-content-calculator
A simple Streamlit app to calculate DNA GC content 🧬
bioinformatics gc-content genomics python streamlit
Language:Python
nawaf-Alharthi / GC_Content_calculate
A simple Streamlit app to calculate DNA GC content 🧬
python bioinformatics gc-content streamlit genomics
Language:Python
stanuch / gc-content-analyzer
📊 Tool for analyzing and visualizing GC content in DNA sequences with FASTA input and sliding window analysis.
biopython cli dna gc-content gc-content-analysis genomics
Language:Python
yehonatanke / genomic_analysis
Computational toolkit for DNA sequence analysis.
dna-sequence-analysis gc-content genomics random-forest sequence-classification structural-analysis
Language:Python