read-alignments

There are 0 repository under read-alignments topic.

Mangul-Lab-USC / review-technology-dictates-algorithms
A systematic survey of algorithmic foundations and methodologies across 107 alignment methods (1988-2021), for both short and long reads. We provide a rigorous experimental evaluation of 11 read aligners to demonstrate the effect of these underlying algorithms on speed and efficiency of read alignment. Described by Alser et al. at https://arxiv.org/abs/2003.00110.
read-alignments needleman-wunsch smith-waterman heuristics read-mapping sequence-alignment hts nanopore-sequencing illumina-sequencing pacbio-sequencing hifi-read genome-analysis
Language:Jupyter Notebook 6
svkazakov / ra-visualizer
Genome read alignments visualizer
alignments genome genome-analysis read-alignments reads
Language:Python 2

Mangul-Lab-USC / review-technology-dictates-algorithms