alignments

There are 0 repository under alignments topic.

• foldseek

  steineggerlab / foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  alignmentsbioinformaticsclusteringprotein-structure
  Language:C 660

• litefeel / Unity-AlignTools

  Align Tools is just perfect Unity asset plugin to align gui object

  unity-editoralignmentunity3d-pluginalignalignmentsdistributeresize
  Language:C# 99

• nellore / rail

  Scalable RNA-seq analysis

  rna-seq-analysisemrmapreducealignmentsipythonrail-rna
  Language:Python 72

• bcgsc / HLAminer

  ⛏ HLA predictions from NGS shotgun data

  hla-predictiontargeted-assemblieshla-sequenceshotgun-sequence-datasetsoxford-nanoporealignments
  Language:Perl 50

• telatin / covtobed

  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file

  bioinformaticsbioinformatics-toolbiocondabedalignmentsbam-filessequence-coverage
  Language:C++ 44

• behnamazimi / curly-html-elements

  Mini tool for arranging HTML elements along with ellipse subset shapes

  htmlalignmentsellipsealign-html-elementscurly-html-elements
  Language:JavaScript 16
• PARASITE

  YerevaNN / PARASITE

  🪱 PARASITE || A parallel sentence data preprocessing toolkit. Originally developed as a part of the `en-ru` winner submission of WMT20 Biomedical Translation Task.

  machine-translationpreprocessingalignmentsparallel-corpusnatural-language-processingdeep-learningcrosslingual
  Language:Python 11

• UniBoDS4H / IA

  Fiji / ImageJ plugin for Imaging Alignment. This plugin manages two types of alignment: Manual Alignment and Automatic Alignment.

  alignmentsfiji-pluginimage-processingimagej-pluginsjava
  Language:Java 8

• Lucy-Forrest-Lab / AlignMe

  Pairwise alignment of membrane protein sequences

  alignmentsalignment
  Language:C++ 6

• aquaskyline / MICA-aligner

  MICA-aligner is a new short-read aligner that is optimized in view of MIC's limitation and the extra parallelism inside each MIC core.

  intel-micalignmentsalignerbioinformaticscomputational-biology
  Language:C 5

• ASSERT-KTH / STRAC

  STRAC (Scalable Trace Comparison) http://arxiv.org/pdf/1910.03478

  dtwv8bytecodetracesalignmentsjavajavscript
  Language:Roff 5

• bioteam / covid-bioinformatics

  Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs

  covid-19covid19covidcovid-bioinformaticsanalyze-coronavirus-sequencescoronavirushmmscovbed-filesalignmentsbioinformaticscovid19-datasars-cov-2
  Language:Python 4

• V-Z / hybseq-scripts

  Set of scripts to process HybSeq target enrichment HTS data (on computing grids).

  ngs-pipelinehybseq-dataphylogenomicsngsdata-sciencedata-analysismolecular-biologyparalogsbioinformatics-pipelinebioinformatics-scriptsbioinformatics-analysisgenomicsbioinformaticshybpipergene-treealignmentsspecies-treehybseq-scriptsmetacentrumngs-scripts
  Language:Shell 4
• Jupiter-Bioinformatics-V2-experiments

  Gagniuc / Jupiter-Bioinformatics-V2-experiments

  Jupiter Bioinformatics (V2) uses the local sequence alignment algorithm and a few stored experiments for further experimentation on sequence alignment. It is an open source application designed in native JavaScript, that is able to align two sequences/texts in order to match the regions that are similar.

  localsequencebioinformaticsalignmentsheatmapjavascript
  Language:HTML 3

• lvn3668 / fastqcparser

  Python code to compute adatper content in reads, kmer content, per-base-GC content (at a specific position in a read alignment, against reference genome), per base NC content (at a specific position in a read alignment against the reference genome), per base seq quality (across aligned reads), per base sequence content, per base quality scores, per tile sequence quality

  pythonfastqcngs-analysisalignmentsreads
  Language:Python 3
• thesis

  anebz / thesis

  The effects of word segmentation quality on word alignments.

  thesismaster-thesisnlptokenizationalignments
  Language:Jupyter Notebook 2

• bcgsc / dida

  DIDA Project

  indexingalignmentslarge-scale-indexingmpidistributed-indexing
  Language:C++ 2

• svkazakov / ra-visualizer

  Genome read alignments visualizer

  alignmentsgenomegenome-analysisread-alignmentsreads
  Language:Python 2

• t-neumann / versalignLib

  Showcase of parallelization technologies using sequence alignment algorithms

  alignmentssmith-watermanneedleman-wunschparallelizationparallel-computingopenclavxopenmpopenmp-supportsseamd-openclshowcasebenchmarkcmake
  Language:C++ 2

• AngeloGith / SeqMerger

  SeqMerger is designed to concatenate sequences from multiple aligned FASTA files.

  alignmentsconcatenationmultifastaperl
  Language:Perl 1

• gauravcodepro / genomic-alignment-extraction

  genome and transcriptome fraction fetch post alignment.

  alignment-algorithmsalignmentsgenomegenome-annotationgenome-assemblytranscriptome-analysistranscriptomicsalignmentextractgenomealignmenttranscriptomealignment
  Language:Python 1

• gauravcodepro / graphanalyzer

  graphanalyzer python package for dealing with paf and gfa alignments.

  alignmentsbioinformaticsgenomesgraphsgraphs-algorithmsmachinelearninggraphalignments
  Language:Python 1

• mikolajsacha / BioPairwiseOptimization

  Optimization of operations from pairwise2 module in Biopython library

  biopython-libraryalign-dna-sequencesalignmentalignmentsbioinformaticsoptimization
  Language:Jupyter Notebook 1

• MondecaLabs / INSEE-Alignment

  Aligning INSEE SKOS concepts with relevant datasets.

  alignmentslimesrdfskos
  1

• alexdonath / checker_complete-v2

  Finding outlier sequences in amino acid multiple sequence alignments.

  alignmentsquality-assessmentoutlier-detection
  Language:Perl 0

• ammahmoudi / IntroductionToBioinformatics

  Homework Solutions for Introduction to Bioinformatics Course as Computer Science B.Sc. Student at Department of Computer Engineering, Sharif University of Technology

  alignmentsbioinformaticsrosalind-exercises
  Language:Python 0

• jessicaparks / SubOptLocalAlign.jl

  sub-optimal local pairwise alignments and visualization

  alignmentsvisualizations
  Language:Julia 0

• jrod2699 / CS159-NLP-Final-Project-

  nlpibm-alignmentalignments
  Language:JavaScript 0

• mansikath / FASTQ-to-BAM

  This repository streamlines the conversion of raw DNA sequencing data from FASTQ to BAM format, incorporating scripts that not only facilitate BAM conversion but also generate Sequence Alignment Map (SAM) files.

  alignmentalignmentsbam-filesbioinformatics-pipelinedna-sequencesfastqfastq-filesfile-conversiongenomicsgenomics-datamapping-toolsminimapminimap2sam-filessamtools
  0

• maxganser / consistency-script

  Evaluating the consistency of molecular diagnostic characters (signature characters) detected by DeSignate.

  dna-sequencesalignmentsbioinformatics-tooltaxonomybiology
  Language:Python 0

• milesroberts-123 / convert-blast-to-bed

  Convert the output of BLAST to a BED file format that's suitable for uploading to JBrowse.

  blastbedjbrowsealignments
  Language:Python 0

• RIMSHASAJID436 / fontawsome

  create Font Awesome Dashboard for CSS assignment...

  alignmentsiconsmargin
  Language:HTML 0

• campanam / ucealnstats

  Calculate taxon-specific alignment statistics from a collection of UCE alignments

  ucesalignmentsruby
  Language:Ruby

• damianosmel / VirusGenoUtil

  This is a project to contribute utilities for ViruSurf, a viral db centered in viral sequences.

  bioinformaticsvirusalignmentsepitopesdatabase
  Language:Python

• niaid / Principles-of-Sequence-Analysis-and-Phylogenetics

  Materials for the ACE - Uganda course "Principles of Sequence Analysis and Phylogenetics" given in Spring 2020.

  bcbb-trainingace-uganda2020alignmentsphylogeneticsacegenetic-analysisgenomicsvisualization

• soerenmetje / PairAlignment

  Finds optimal alignment of two sequences

  bioinformaticsalignments
  Language:Java