Nadeem Lab @ Memorial Sloan Kettering Cancer Center

Nadeem Lab @ Memorial Sloan Kettering Cancer Center's repositories

DeepLIIF

Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]

Language:PythonNOASSERTION166 6 19

CEP

Computational Endoscopy Platform (advanced deep learning toolset for analyzing endoscopy videos) [MICCAI'22, MICCAI'21, ISBI'21, CVPR'20]

Language:PythonNOASSERTION66 5 10

Physics-ArX

Physics-based data augmentation library for quantifying CT and CBCT images in radiotherapy [PMB'23, PMB'21, Medical Physics'21, AAPM'21]

Language:Python54 6 3

DoseRTX

Domain knowledge driven 3D radiation dose prediction [PMB'22]

Language:Python36 3 6

ImPartial

Interactive deep learning whole-cell segmentation and thresholding using partial annotations

Language:Jupyter NotebookNOASSERTION33 5 14

CIR

Clinically-Interpretable Radiomics [MICCAI'22, CMPB'21]

Language:Python27 5 3

SPT

Spatial profiling toolbox for spatial characterization of tumor immune microenvironment in multiplex images (https://oncopathtk.org)

Language:PythonNOASSERTION21 4 222

SeqX2Y

Sequence-to-sequence image and contour prediction library for longitudinal datasets [PMB'23]

Language:Python17 2 1

coincidencetest

Exact test for significant feature combination

Language:Python6 30

cg-gnn

Create cell graphs from pathology slide data and train a graph neural network to predict patient outcomes for SPT.

Language:PythonAGPL-3.04 3 7

tmi2022

A graph-transformer for whole slide image classification

Language:PythonMIT000