resting-state-fmri

There are 2 repositories under resting-state-fmri topic.

compneuro-da / rsHRF
rsHRF: A Toolbox for Resting State HRF Deconvolution and Connectivity Analysis (MATLAB)
resting-state-fmri hemodynamic-response-function deconvolution data-analysis spm-plugin toolbox
Language:MATLAB 52
brainhack-school2020 / abide-fmri
Repository for the Brainhack School 2020 team working with fMRI and ABIDE data to train machine learning models.
brainhack-school abide-data resting-state-fmri fmri cross-validation autism support-vector-classification cv-classifier jupyter-notebooks nilearn scikitlearn-machine-learning plotly leave-one-out-cross-validation kfold-cross-validation group-kfold-cross-validation reproducible-science preparation-script project-management
Language:Jupyter Notebook 43
easylearn-fmri / easylearn_dev
Easylearn is designed for machine learning mainly in resting-state fMRI, radiomics and other fields (such as EEG). Easylearn is built on top of scikit-learn, pytorch and other packages. Easylearn can assist doctors and researchers who have limited coding experience to easily realize machine learning, e.g., (MR/CT/PET/EEG)imaging-marker- or other biomarker-based disease diagnosis and prediction, treatment response prediction, disease subtyping, dimensional decoding for transdiagnostic psychiatric diseases or other diseases, disease mechanism exploration and etc.
resting-state-fmri machine-learning radiomics deep-learning neuroimaging graphic-user-interface
Language:Python 39
sarslancs / graph_saliency_maps
Graph saliency maps through spectral convolutional networks for brain mapping
deep-learning brain-imaging neuroscience resting-state-fmri ukbiobank
Language:Python 32
asoroosh / xDF
xDF estimates variance of Pearson's correlations among highly autocorrelated time series.
autocorrelation timeseries fmri big-data neuroimaging toeplitz resting-state-fmri
Language:MATLAB 14
weikanggong / BWAS
A Python software package for BWAS
brain-imaging connectivity python resting-state-fmri fmri-data-analysis
Language:Python 10
bids-apps / rs_signal_extract
BIDS App for resting state signal extraction using nilearn.
bids bidsapp resting-state-fmri
Language:Python 6
mychan24 / system-segregation-and-graph-tools
System segregation (see Chan et al. 2014 PNAS) and RSFC brain network tools
cognitive-neuroscience brain-networks resting-state-fmri
Language:MATLAB 6
ekmolloy / fmri_test-retest
Documentation and MATLAB code for test-retest functional MRI studies.
neuroimaging resting-state-fmri reliability
Language:MATLAB 4
neural-tangjie / NTJ-BRANT_stable_master
:octocat: This repository contains the notes, matlab toolbox and implement document of the brant. Enjoy!
brant matlab-toolbox resting-state-fmri
Language:MATLAB 4
weikanggong / sKPCR
A Python software package for sKPCR
fmri-data-analysis python resting-state-fmri network-analysis
Language:Python 4
ConPagnon / conpagnon
Easy Resting State Analysis with Python
easy-to-use machine-learning neuroimaging python resting-state-fmri statistics
Language:Python 3
ssikjeong1 / AE_SSL_fMRI
Inter-Regional High-level Relation Learning from Functional Connectivity via Self-Supervision - PyTorch Implementation (MICCAI 2021)
deep-learning pytorch autism-spectrum-disorder neuroimage resting-state-fmri autoencoder self-supervised-learning
Language:Python 3
yanismiraoui / SpaRG
Sparsely Reconstructed Graphs (SpaRG) for robust and interpretable fMRI analysis using GNNs and VAEs.
brain-connectivity connectomes deep-learning fmri fmri-roi-analysis generalization gnn neuroimaging resting-state-fmri sparsification vae
Language:Python 3
htwangtw / sbfc
Seed-based resting-state functional connectivity with Nilearn.
functional-connectivity resting-state-fmri nilearn brainweb neuroimaging fmri
Language:Python 2
alruizzo / A-MTL
Analysis scripts used to analyze the local and global functional connectivity of the medial temporal lobe including the amygdala ('A-MTL') described in Ruiz-Rizzo et al. (2020), NeuroImage.
amygdala brain-networks functional-connectivity medial-temporal-lobe resting-state-fmri
Language:Shell 1
alruizzo / interFC
Between-network functional connectivity across frequency bins described in Küchenhoff et al. (2021), European Journal of Neuroscience.
functional-connectivity frequency-bins resting-state-fmri brain-networks
Language:MATLAB 1
mychan24 / Chan_RSFC_Nodes
Resting-state Functional Correlation (RSFC) node set (Chan et al. 2014 PNAS)
resting-state-fmri brain-networks brain-imaging cognitive-neuroscience
Language:Shell 1
pni-lab / PUMI
PUMI: neuroimaging Pipelines Using Modular workflow Integration
dwi neuroimaging nipype preprocessing resting-state-fmri
Language:Python 1
snapfinger / Untamed
Graph Learning for Cortical Parcellation from Tensor Decomposition of resting-state fMRI
unsupervised-learning resting-state-fmri cortical-parcellation graph-representation-learning neuroscience
Language:Jupyter Notebook 1
yuzhounh / SLIC_2
Scripts for the paper: A supervoxel-based method for groupwise whole brain parcellation with resting-state fMRI data.
supervoxel brain-parcellation resting-state-fmri normalized-cuts
Language:MATLAB 1
BTajini / tICA
Computing Temporal ICA from HCP resting state data using Functional Modes DiFuMo atlas.
data-generation independent-component-analysis resting-state-fmri
Language:HTML 0
ejrise / SKIP_highres_FC
Tools for mapping human motor circuits - with implications for Parkinson's Disease
resting-state-fmri parkinsons-disease
Language:Shell 0
lukasbehammer / Clustering-of-HCP-Unrelated-100-Subjects-by-ROI-Correlations-in-Resting-State-fMRI
This is a Work In Progress (WIP) project. It is part of my undergraduate studies in Biomedical Engineering at Ostbayerische Technische Hochschule in Germany. This repository incorporates the code and results of my participation in the course Data Science Projects: Train you own Machine Learning Model.
fmri fmri-analysis fmri-data-analysis machine-learning mri neuroscience python resting-state-fmri human-connectome-project
Language:Jupyter Notebook 0
Minarose / Resting-State-fMRI-Analysis
some of the work I've done with resting-state fMRI
resting-state-fmri functional-connectivity preprocessing-data
Language:Jupyter Notebook 0
Utrosa / Thesis_scripts
Scripts used in the "Dynamic Functional Connectivity in Autism Spectrum Disorder" project.
autism autism-spectrum-disorder fmri fmri-data-analysis fmri-preprocessing fmriprep functional-connectivity matlab python r-programming resting-state resting-state-fmri scripts quasi-periodic-patterns
Language:HTML 0
brainhack-school2020 / Sylvain_RestingBariatricSurgery
surgery weight-loss obesity food-intake food-disinhibition cognitive-functions mri resting-state-fmri preprocessing
Language:Jupyter Notebook
laplcebeltrami / orderstat
Topological data analysis of brain networks through order statistics
brain-networks order-statistics persistent-homology resting-state-fmri topological-data-analysis
Language:MATLAB
yuzhounh / SLIC
Scripts for the paper: A supervoxel-based method for groupwise whole brain parcellation with resting-state fMRI data.
supervoxel brain-parcellation resting-state-fmri normalized-cuts
Language:MATLAB

resting-state-fmri

compneuro-da / rsHRF

brainhack-school2020 / abide-fmri

easylearn-fmri / easylearn_dev

sarslancs / graph_saliency_maps

asoroosh / xDF

weikanggong / BWAS

bids-apps / rs_signal_extract

mychan24 / system-segregation-and-graph-tools

ekmolloy / fmri_test-retest

neural-tangjie / NTJ-BRANT_stable_master

weikanggong / sKPCR

ConPagnon / conpagnon

ssikjeong1 / AE_SSL_fMRI

yanismiraoui / SpaRG

htwangtw / sbfc

alruizzo / A-MTL

alruizzo / interFC

mychan24 / Chan_RSFC_Nodes

pni-lab / PUMI

snapfinger / Untamed

yuzhounh / SLIC_2

BTajini / tICA

ejrise / SKIP_highres_FC

lukasbehammer / Clustering-of-HCP-Unrelated-100-Subjects-by-ROI-Correlations-in-Resting-State-fMRI

Minarose / Resting-State-fMRI-Analysis

Utrosa / Thesis_scripts

brainhack-school2020 / Sylvain_RestingBariatricSurgery

laplcebeltrami / orderstat

yuzhounh / SLIC