fmri-preprocessing

There are 3 repositories under fmri-preprocessing topic.

• nipreps / fmriprep

  fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

  fmrifmri-preprocessingbrain-imagingneuroimagingbidsimage-processing
  Language:HTML 609

• andrewjahn / AndysBrainBook

  This repository contains the files that generate Andy's Brain Book on ReadTheDocs.

  fmri-data-analysisfmri-analysisfmri-task-based-analysisfmri-preprocessingfsl
  162

• DCAN-Labs / abcd-hcp-pipeline

  bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

  bids-formatfmrifmri-preprocessingimage-processingmri-imagespipeline
  Language:Python 46

• karnigili / Computational-Neuroscience

  Using computational tools to explore the networks underlying cognitive neuroscience

  fmrifmri-preprocessingfmri-analysislstmicatutorial-code
  Language:Jupyter Notebook 23

• nmningmei / preprocessing_pipelines

  Preprocessing Pipelines for EEG (MNE-python), fMRI (nipype), MEG (MNE-python/autoreject) data

  preprocessingpipelineseegmegfmri-preprocessingpython3nipypemne-pythonfsl
  Language:Jupyter Notebook 22
• fmriprep_denoising

  sjburwell / fmriprep_denoising

  Scripts for comparing different fmriprep denoising approaches on quality control functional connectivity (QC-FC) motion, QC-FC distance-dependence, and temporal degree of freedom loss.

  fmriprepfmri-preprocessingfmri
  Language:Python 15

• phildean / SPM_fMRI_Example_Pipeline

  Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

  matlabspmfmrifmri-preprocessingfmri-data-analysisfmri-task-based-analysisneuroimagingneuroscience-methodsneurosciencepsychology
  Language:MATLAB 14
• nndb

  lab-lab / nndb

  Analysis scripts and movie annotations for NNDb

  fmri-data-analysisfmri-preprocessingmovie-annotations
  Language:Shell 13

• elayden / MRIqual

  A Matlab toolbox for examining the quality of structural (SNR) and functional (tSNR, SFNR) MRI

  matlab-toolboxqualitytsnrmriconvert-dicomsmri-brainmri-imagesfmrifmri-preprocessingfmri-data-analysisquality-assurancequality-controlquality-metricsquality-checkquality-measuresfmri-datamri-datamri-signals
  Language:MATLAB 11

• elliohow / fMRI_ROI_Analysis_Tool

  An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of temporal signal to noise ratio.

  fmrifmri-preprocessingpythonneuroimagingbrain-imagingfmri-roi-analysis
  Language:Python 11

• GT-EmoryMINDlab / rodent-whole-brain-preprocessing-recipe

  A generally applicable whole-brain preprocessing toolbox for mice and rats

  image-processingsignal-processingrodentfmri-preprocessing
  Language:MATLAB 7
• AutismBrainSVM

  biotechlibrary / AutismBrainSVM

  This code repository contains a collection of Python scripts for classifying autistic and control conditions using Support Vector Machines (SVM), leveraging preprocessed functional MRI (fMRI) data from the ABIDE dataset.

  fmrifmri-data-analysisfmri-preprocfmri-preprocessingneuroimagingopen-sourceopensourcesvmsvm-classifierabide-data
  Language:Python 6

• alexlaurence / CLARA

  🐀🧠Using Convolutional Neural Networks to Predict fMRI Noise in Rats

  fmri-preprocessingbrain-imagingratopencvtensorflowimage-processingpreclinical-imagingdeep-learning
  Language:Jupyter Notebook 5

• harsharaman / bold5000_fmri

  Implementation of LSTM and CNN models for classification of visual stimuli from fMRI data on BOLD5000 dataset

  fmrifmri-preprocessingboldlstmcnn
  Language:Jupyter Notebook 5

• dcdace / fMRI-COGNESTIC-23

  Materials for the "fMRI analysis" workshop at the Cognitive Neuroscience Skills Training In Cambridge-2023 (COGNESTIC-2023).

  fmrifmri-analysisfmri-data-analysisfmri-preprocessingworkshop-materials
  Language:Jupyter Notebook 3

• LabNeuroCogDevel / fmri_processing_scripts

  legacy signal processing leveraging afni, ants, fsl, nipy, robex, and wavelet toolbox - brnfswdktm

  fmrifmri-preprocessing
  Language:Shell 3

• brain-modelling-group / fmripop

  A collection of python scripts and functions to (po)st(p)rocess fmridata, preprocessed with fmriprep

  fmri-preprocessingfmri-datafmrifmri-postprocessing
  Language:Python 2

• Remi-Gau / AVT_analysis

  Code to analyze audio-visual-tactile high-resolution 7T data

  fmrifmri-data-analysisfmri-task-based-analysisfmri-preprocessingneuroimagingspmcbs-toolshigh-resolution
  Language:MATLAB 2

• abdullahbas / SPM_AUTO

  Command line automation of SPM

  spmspm12automationfmrifmri-data-analysisfmri-preprocessingfmriprep
  Language:MATLAB 1

• aramis-lab / clinica_pipeline_fmri_preprocessing

  fMRI-Preprocessing pipeline used for [Guillon et al., 2019]

  pythonfmri-preprocessing
  Language:Python 1

• asamallab / Curvature-FCN-ASD

  This repository is associated with the manuscript: “Graph Ricci Curvatures Reveal Atypical Functional Connectivity in Autism Spectrum Disorder”

  networksciencecurvaturefmri-data-analysisfmri-preprocessing
  Language:Python 1

• chris-langfield / fslfeatsetup

  Python library for setting up FEAT analyses (FSL)

  fslneuroimagingfmrifmri-preprocessingfmri-data-analysis
  Language:Python 1

• jocelynloklingyim / fMRI_automation_SPM12.mat

  spmfmri-data-analysisfmri-preprocessingevent-relatedmonetary-reward
  Language:MATLAB 1

• maryjis / preprocessing_fmri_dti

  This repo is provided pipeline for preprocessing fmri & dti data to functional and structural connectivity matrices

  cobreconnectivity-matrixfmri-preprocessingpreprocessing-pipelinedti-preprocessing
  Language:Jupyter Notebook 1

• Robin970822 / mouse-mri

  preprocessing and statistical analysis for mouse MRI.

  mrifmri-preprocessingfmri
  Language:MATLAB 1

• yunfeiluo / fMRI_DTI_processing_pipelines

  fMRI data processing pipelines

  image-processingpipelinefmri-preprocessingfmri-data-analysisdata-engineeringdata-sciencedeep-learninggenerative-adversarial-network
  Language:Python 1

• gauravsangwan / f-MRI_Symphony

  This GitHub repository contains code and data for a assignment investigating the brain's auditory networks using functional Magnetic Resonance Imaging (fMRI).

  aal3fmri-analysisfmri-preprocessingmarsbarmatlabspm12
  Language:MATLAB 0

• jessedesimone / fmri_proc

  shell script package for (pre)processing fmri data

  fmrifmri-data-analysisfmri-preprocfmri-preprocessingfmri-roi-analysisfmri-task-based-analysis
  Language:Shell 0

• ngs5 / fdm

  Repository for initial code behind OpenNFT's motion monitoring add-on (afterwards renamed to real-time quality assessment module (rtQA)).

  motionfmrifmri-preprocfmri-preprocessingreal-time-monitoringreal-time
  Language:Python 0

• P-VS / UZB-fmr-processing-scripts

  This repository contains batch scripts to standardise and automate the processing of single echo (SE-fMRI), multi-echo (ME-fMRI) fMRI and VBM data in SPM12.

  fmri-analysisfmri-data-analysisfmri-preprocessingspm12vbm
  Language:MATLAB 0

• sepehr-mortaheb / fMRI_preproc_SPM

  This repository suggests an organized pipeline for spatial preprocessing of fMRI data (both task-based and resting-state).

  cat12fmri-preprocessingspm12
  Language:MATLAB 0

• yousef-seyfari / Computational-Neuroscience

  This repository contains some codes for the computational neuroscience.

  asdautismcomputational-neuroimagingcomputational-neurosciencefmrifmri-data-analysisfmri-preprocessingconvertdicomdicom-imagesniftinifti-formatspm5
  Language:Jupyter Notebook 0

• ausdfrost / round_robin_person_decoding

  predictive machine learning classification and data processing on neuroscience brain image data

  computational-neurosciencefmri-data-analysisfmri-preprocessingsearchlight-analysis
  Language:Python

• JeffTheNinja57 / research_workshop

  Comparing latent space representations using autoencoders and vision transformers using fMRI data.

  autoencoderfmrifmri-preprocessinglatent-spacersavisual-transformer
  Language:Python

• Rutatu / experimental_methods_II

  Portfolio assignments mainly focused on how the general linear model (GLM) can be used for the analysis of brain scan data. 2019 spring semester at Aarhus University

  regression-modelslinear-regressionfmri-preprocessingfmri-data-analysisfmri-study-designmixed-effects-modelseegeeg-analysisprincipal-component-analysisfactor-analysis

• Utrosa / Thesis_scripts

  Scripts used in the "Dynamic Functional Connectivity in Autism Spectrum Disorder" project.

  autismautism-spectrum-disorderfmrifmri-data-analysisfmri-preprocessingfmriprepfunctional-connectivitymatlabpythonr-programmingresting-stateresting-state-fmriscriptsquasi-periodic-patterns
  Language:HTML