pymol-plugin

There are 4 repositories under pymol-plugin topic.

MengwuXiao / GetBox-PyMOL-Plugin
A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.
ledock autodock vina docking box pymol-plugin
Language:Python 72
pymodproject / pymod
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
pymol bioinformatics sequence-alignments structural-alignments homology-modeling similarity-searches pymol-plugin protein-structures protein-sequences
Language:Python 71
MooersLab / pymolshortcuts
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
pymol pdb shortcuts pymol-python aliases startup-script agile-pymol molecular-graphics pymol-plugin molecular-artwork biomolecular-artwork structural-bioinformatics protein-structure-analysis pml scripting figure-making image-making efficient-programming agile-programming ergonomic-keyword-use
Language:Python 63
paiardin / DockingPie
A Consensus Docking Plugin for PyMOL
molecular-modeling pymol pymol-extension pymol-plugin ligand molecular molecular-docking molecular-dynamics
Language:Python 61
cbalbin-bio / pymol-color-alphafold
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
alphafold alphafold2 bioinformatics computational-biology protein-structure structural-biology pymol pymol-plugin
Language:Python 49
PyVibMS
smutao / PyVibMS
A PyMOL plugin for visualizing vibrations in molecules and solids
pymol-plugin vibrational-spectroscopy quantum-chemistry theoretical-chemistry computational-physics pymol computational-chemistry
Language:Python 35
bobbypaton / wSterimol
Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents
sterimol sterics qsar pymol conformational-analysis organic-chemistry steric-parameters pymol-plugin sterimol-parameters
Language:Python 24
rasbt / BondPack
A collection of PyMOL plugins to visualize atomic bonds.
pymol-plugin python hydrogen-atoms atom
Language:Python 21
LModeA-nano
smutao / LModeA-nano
calculate chemical bond strength in solids, surfaces and molecules
pymol-plugin computational-chemistry theoretical-chemistry solid-state-physics
Language:Python 21
rinikerlab / restraintmaker
Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.
restraints interactive topology-building system-generation md-simulations free-energy-calculations python3 pymol-plugin python
Language:Python 17
LBC-LNBio / parKVFinder
parKVFinder: thread-level parallel KVFinder
cavity-characterization cavity-detection pymol-plugin
Language:Python 12
LBC-LNBio / parKVFinder-win
parKVFinder-win: thread-level parallel KVFinder for Windows
cavity-characterization cavity-detection pymol-plugin
Language:C 9
unizar-flav / PyViewDock
Docking viewer plug-in for PyMOL
pymol pymol-plugin docking bioinformatics proteins pdb
Language:Python 5
ArturKlauser / pymol-pdb-plugin
PDB plugin for PyMOL
pymol-plugin pymol pdbpymol python3
Language:Python 4
atfrank / PyShifts
Pyshifts: A Pymol Plugin for Chemical Shift-Based Analysis of Biomolecular Ensembles
chemical-shift pymol-plugin pymol error-analysis
Language:Python 4
fingernat-pymol-plugin
filipsPL / fingernat-pymol-plugin
PyMOL plugin to visualize interactions detected by the fingeRNAt program
molecular-interactions molecular-modeling pymol-plugin visualization
Language:Python 4
HaolingZHANG / pymolBE
Customized batch exhibition of three-dimensional molecules based on pymol framework
batch-processing parallel pymol-extension pymol-plugin visualization
Language:Python 4
RUBi-ZA / pyMODE-TASK
MODE-TASK plugin for PyMOL
pca nma molecular-dynamics normal-modes mds tsne-algorithm pymol pymol-plugin pymode-task tkinter principal-component-analysis protein-structure protein md pdb rmsd trajectory-analysis molecular-dynamics-simulation python
Language:C++ 4
exTerEX / pymol-ramachandran
A simple script to generate Ramachandran plot from Pymol.
pymol pymol-plugin ramachandran-plot ramachandran matplotlib-pyplot graphics figures
Language:Python 3
GoetzParsiegla / Smina-plugin
This is a plugin for PyMol 2.x to use the vina/Autodock fork SMINA under Windows 10 or 11 with the wsl2 linux subsystem installed.
smina pymol-plugin python3 pymol plugin wsl-ubuntu wsl2 molecular-docking
Language:Python 3
NRGlab / NRGsuite
NRGsuite is a PyMOL plugin (GUI) for FlexAID
protein-ligand-interactions protein-ligand-docking molecular-docking pymol-plugin
Language:Python 3
cbalbin-bio / pymol-map-pocket
PyMOL extension to map a protein pocket, generated from PockDrug, to the full protein structure.
computational-biology structural-biology pymol bioinformatics pymol-plugin drug-targets drug-discovery
Language:Python 2
HNUBioinformatics / InPrNa
A tool for insight into protein-nucleic acids interaction information
python pymol-plugin
Language:Python 2
GoetzParsiegla / Dipolemoment-plugin
This is a plugin for PyMol 2.x to calculate and show the dipole moment vector of a proteine structure in pdb format.
pymol-plugin python3 pymol plugin
Language:Python 1
JMB-Scripts / dssp-to-pymol
Assess the secondary structure in Pymol
protein protein-structure pymol pymol-plugin secondary-structure structural-biology
Language:Python 1
LBC-LNBio / PyMOL-KVFinder-web-Tools
PyMOL KVFinder-web Tools: a PyMOL v2 plugin for interacting with KVFinder-web service
cavity-characterization cavity-detection pymol-plugin webservice-client
Language:Python 1
miroslavkurka / wkplugin
A PyMol plugin for calculating Wu-Kabat Variability and displaying it on the pdb model
protein-sequences protein-structure pymol-plugin python3
Language:Python 1
scatter3d / noodle-strut
noodle-strut is an interactive 3D printing structural support module for PyMOL
3d-printing protein-structure protein-modeling pymol pymol-plugin
Language:Python 1
SerenaRosi / PyMOL-toolbox
pymol pymol-plugin python
Language:Python 1
Three-Arm-Turnstile-Assistant
smutao / Three-Arm-Turnstile-Assistant
PyMOL plugin to modify molecular structure via turnstile rotation
pymol pymol-plugin computational-chemistry theoretical-chemistry molecular-modeling nmr chemistry
Language:Python 1
tongalumina / rmsdca
PyMOL script to calculate backbone RMSD of two polypeptides of same origin
pymol-plugin molecular-graphics
Language:Python 1
tsj5 / APBS_Qt_plugin
Demo/experimental port of APBS plugin to PyQt for PyMOL 2.x.
pymol pymol-plugin
Language:Python 1
abdullateefv / PyMolCopilot
An AI Assistant for the PyMOL molecular visualization software
ai gpt pymol-plugin
Language:Python 0
FabioFalcioni / PyMol_SphericalHarmonics
Spherical Harmonics plugin/extension for PyMol
atomic-orbitals chemistry computational-chemistry graphics multipole physics pymol pymol-extension pymol-plugin pymol-python spherical-harmonics multipole-moments
Language:Python 0
xing1wan / list_unaligned_resi
A PyMOL script to calculate alpha carbon distances between two aligned protein structures
pymol-plugin molecular-graphics
Language:Python 0
zmactep / pymol-designer
Protein design tools as PyMOL plugin
antibody pymol-plugin protein-design
Language:Python

pymol-plugin

MengwuXiao / GetBox-PyMOL-Plugin

pymodproject / pymod

MooersLab / pymolshortcuts

paiardin / DockingPie

cbalbin-bio / pymol-color-alphafold

smutao / PyVibMS

bobbypaton / wSterimol

rasbt / BondPack

smutao / LModeA-nano

rinikerlab / restraintmaker

LBC-LNBio / parKVFinder

LBC-LNBio / parKVFinder-win

unizar-flav / PyViewDock

ArturKlauser / pymol-pdb-plugin

atfrank / PyShifts

filipsPL / fingernat-pymol-plugin

HaolingZHANG / pymolBE

RUBi-ZA / pyMODE-TASK

exTerEX / pymol-ramachandran

GoetzParsiegla / Smina-plugin

NRGlab / NRGsuite

cbalbin-bio / pymol-map-pocket

HNUBioinformatics / InPrNa

GoetzParsiegla / Dipolemoment-plugin

JMB-Scripts / dssp-to-pymol

LBC-LNBio / PyMOL-KVFinder-web-Tools

miroslavkurka / wkplugin

scatter3d / noodle-strut

SerenaRosi / PyMOL-toolbox

smutao / Three-Arm-Turnstile-Assistant

tongalumina / rmsdca

tsj5 / APBS_Qt_plugin

abdullateefv / PyMolCopilot

FabioFalcioni / PyMol_SphericalHarmonics

xing1wan / list_unaligned_resi

zmactep / pymol-designer