There are 4 repositories under amber topic.
A Crystal web framework that makes building applications fast, simple, and enjoyable. Get started with quick prototyping, less bugs, and blazing fast performance.
The Open Forcefield Toolkit provides implementations of the SMIRNOFF format, parameterization engine, and other tools. Documentation available at http://open-forcefield-toolkit.readthedocs.io
ORM Model with Adapters for mysql, pg, sqlite in the Crystal Language.
A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies
List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning
A project (and object) for storing, manipulating, and converting molecular mechanics data.
Introduction to the Amber web framework and its features
A command line application to launch molecular dynamics simulations with OpenMM
Web Components implementation of the Amber Design System.
Build atomistic structures of carbon nanotubes with the possibility to add functional groups (OH, COOH, COO-) and assigns generalized Amber (GAFF) parameters to them.
openHAB binding to receive and decode WMBus messages (OMS+Techem)
A collection of command-line tools (and Python functions) that can be used to work with data from the Amber Electric API.
Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
Package to perform minimum-distance distribution analyses of complex solute-solvent interactions
Docs & guides for the Amber Design System.
WIP. amber framework realworld example app
This code adds custom-made amino acids to the GROMACS forcefield directory.
A Vue.js recipe for the Amber Framework.
Amber-theme for Windows Terminal
Visualise your Amber electricity consumption using this flutter dashboard.
A Jekyll website for the research guides--UNIX, AMBER, Analysis, and R.
Web app for Vladivostok's triathlets
PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis
This repository describes me
Power your app's data links with named entity recognition and disambiguation. A special library for android.
This is a tutorial to perform the lennard-jones parameter scaling for rs-remd (repulsive scaling remd) simulations for the amber package.