soft-matter

There are 1 repository under soft-matter topic.

• espresso

  espressomd / espresso

  The ESPResSo package

  c-plus-pluslattice-boltzmannmolecular-dynamicsphysicspythonscientific-computingsoft-matter
  Language:C++ 224
• lammps-input-files

  simongravelle / lammps-input-files

  LAMMPS inputs and data files

  lammpsmolecular-dynamicsinputsscriptspythonoctavegrapheneionsall-atomsatomicmolecularsimulationpolymersoft-matterwaterlammps-input
  223

• glotzerlab / fresnel

  Publication quality path tracing in real time.

  cudaoptixpath-tracingpythonsimulationsoft-matter
  Language:C++ 113

• ludwig-cf / ludwig

  A lattice Boltzmann code for complex fluids

  fluid-dynamicssoft-matterparallel-computing
  Language:C 51

• Morpho-lang / morpho

  The Morpho language 🦋. Morpho is a small embeddable language for scientific computing applications.

  bytecodeccomputational-geometryinterpreterlanguagemorphooptimizationscripting-languagessoft-matter
  Language:C 31
• amep

  amepproject / amep

  The Active Matter Evaluation Package (AMEP) - a Python library for the analysis of particle-based and continuum simulation data of soft and active matter systems

  active-matteranalysisbrownian-dynamicsbrownian-dynamics-simulationcoarse-grainingcomputational-physicsdata-analysismolecular-dynamicsmolecular-dynamics-simulationphysicspythonsoft-mattertrajectory-analysisscientific-computingscientific-visualizationvisualization
  Language:Python 10

• RadostW / stochastic

  Pychastic is a stochastic differential equations integrator written entirely in python.

  fluid-dynamcisfluid-mechanicsjaxmolecular-dynamics-simulationphysicspythonsoft-matterstochastic-differential-equationstokesian-hydrodynamics
  Language:Python 10

• sfalmo / NeuralDFT-Tutorial

  Neural functional theory for inhomogeneous fluids - Tutorial

  machine-learningsoft-matterstatistical-mechanicsclassical-density-functional-theorymonte-carlo-simulationneural-networks
  Language:Jupyter Notebook 9

• madgal / VoronoiAnalysis

  Python code that can be used to analyze molecular dynamics simulations of proteins/polymers solvated in water. The first and second hydration shells are calculated, the molecular volume, the partial molar volume, and the number of waters associated with each side chain are calculated. This is specifically for PNIPAM but can be modified fairly easily to suit other polymers/protiens. The MDAnalysis library is used for parsing trajectories. Voronio polygons are created using the pyvoro wrapper of Voro++.

  polymersoft-mattervoronoi-polygonshydration-properties
  Language:Python 8

• grasingerm / polymer-stats

  Computational statistical mechanics of field-responsive polymer chains

  monte-carlo-simulationpolymer-physicssoft-mattermean-field-theorymcmc
  Language:Julia 6

• sfalmo / NeuralDFT

  Neural functional theory for inhomogeneous fluids: Fundamentals and applications

  classical-density-functional-theorymachine-learningneural-networkssoft-matterstatistical-mechanics
  Language:Python 6
• TLS_ML_exploration

  SCiarella / TLS_ML_exploration

  Iterative training to explore glassy landscapes

  glassmachine-learningsoft-matter
  Language:Python 5

• duxfrederic / ddmsoft

  Python GUI for the quick processing, analysis and plotting of differential dynamic microscopy data

  microscopyddmvideosoft-mattersoftmatterdifferentialdynamic
  Language:Python 4

• yketa / active_particles

  Code developed for a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.

  active-mattercomputational-physicsnonequilibrium-physicspythonsoft-matter
  Language:Python 4

• simongravelle / publication-data

  Data from recent publications

  scientific-paperopen-researchinterfacemolecular-dynamicsnmroutreachsaltsoft-matterwaterdataopen-datagromacslammpsbash
  Language:Jupyter Notebook 3

• PKua007 / rampack

  Random And Maximal PACKing PACKage

  crystalshard-particleliquid-crystalsmonte-carlo-simulationparticle-systemsoft-matterrampack
  Language:C++ 2

• RadostW / PyGRPY

  Python port of Generalized Rotne Prager Yamakawa hydrodynamic tensors.

  fluid-dynamicsfluid-mechanicsjaxphysicspythonsoft-matterstokes-flowstokesian-hydrodynamics
  Language:Python 2

• wahabk / colloidoscope

  A deep learning approach for particle detection from super-resolution microscopy.

  deep-learningparticle-physicspythonpytorchsoft-matter
  Language:HTML 2

• alextbradley / Contact-angle-hysteresis-PRF

  Code to run simulations and produce figures for Bradley et al. 2021, "Droplet trapping in bendotaxis caused by contact angle hysteresis"

  elastocapillarityfluid-dynamicspapersoft-matter
  Language:MATLAB 1

• RadostW / saxs_single_bead

  All Python package to compute small angle X-ray scattering (SAXS) profiles in one-bead-per-residue approximation with numpy

  disordered-proteinsphysicsprotein-structuresaxsscatteringsoft-matter
  Language:Python 1

• PhyBi / Collective-Cell-Dynamics

  2D simulation of confluent cell collectives based on a coarse-grained bead-spring model

  active-mattercollective-dynamicsemergent-behaviormolecular-dynamicsphase-transitionssimulationsoft-mattertissue-models
  Language:Fortran 0

• Ramy-Badr-Ahmed / Bending-Stiffness

  Bending Stiffness of Actin Filaments

  actincytoskeletonjavasesoft-matter
  Language:Java 0

• fengwangPhysics / soft-matter-journal-club

  soft matter journal club

  soft-matter

• lukaselflein / charge_optimization_folderstructure

  Create a consistent, documented pipline and folder structure for self-consistent MD charge optimization.

  molecular-dynamicssimulationsoft-mattergromacs
  Language:Python

• yketa / shear_ellipsoids

  Code developed for a research project at Umeå universitet focusing on sheared packings of ellipsoids, supervised by Peter Olsson.

  computational-physicssoft-matterstatistical-physics
  Language:Shell

• yketa / UBC_2018_Wiki

  Wiki of a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.

  active-mattercomputational-physicsnonequilibrium-physicssoft-matter
  Language:HTML

• yketa / Umea_2017_Wiki

  Notes of a research project at Umeå universitet focusing on sheared packings of ellipsoids, supervised by Peter Olsson.

  computational-physicssoft-matterstatistical-physics
  Language:HTML