splicing-visualization

There are 1 repository under splicing-visualization topic.

nsalomonis / altanalyze
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
rna-seq-data alternative-splicing scrna-seq-data bioinformatics-pipeline clustering pathway-analysis network-analysis splicing-quantification splicing-visualization python fastq-anaysis bam-files single-cell-splicing cell-cycle cell-type-classification marker-gene-analysis graphical-interface command-line-tool pagerank louvain-community-detection
Language:Python 91
VCCRI / Ularcirc
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
circrna rna-seq-analysis circular-rna sequencing-rna rna-seq splicing-analyses splicing-visualization backsplicing
Language:R 15
matteocereda / RNAmotifs
RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins
splicing-analyses splicing-visualization rna-splicing-map rna-binding-proteins multivalent-rna-motifs alternative-splicing-analysis exon identify-clusters rna-binding r
Language:C++ 8
SoniaRuiz / introverse_v2
Second version of IntroVerse
alternative-splicing database splicing-analyses splicing-detection splicing-event splicing-visualization transcriptomics ensembl-v105 novel-splicing-detection
Language:R 0
sivkri / splicing-events-calculation
Calculate five major splicing events using rMATS followed by annotation
splicing splicing-quantification splicing-analyses splicing-event splicing-visualization splicing-event-filter splicing-detection splicing-annotation
Language:Jupyter Notebook