matteocereda

Matteo Cereda's repositories

RNAmotifs

RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

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GSECA

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

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AI

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ceredaR

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FOXA1_public

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PERALTA

IIGM HPC

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proliferation_assay

This is a R Shiny application to visualise proliferation curves

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BWA_GATK_Mutect

Pipeline for mutation calling using MuTect

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ClonalEvolution_tutorial

Tumor Clonal Evolution

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FPO

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novoalinToMutect

How to run Mutect using Novoaling as aligner

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Rotolo_et_al_2022

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sc_datasets

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STAG

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strelka

Strelka2 germline and somatic small variant caller

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