rna-binding-proteins

There are 3 repositories under rna-binding-proteins topic.

• kkrismer / transite

  RNA-binding protein motif analysis

  rna-binding-proteinsr-packageyaffe-labmitbioinformatics
  Language:R 10
• CRAFT

  annadalmolin / CRAFT

  CRAFT is a computational pipeline that predicts circRNA sequence and molecular interactions with miRNAs and RBPs, along with their coding potential. CRAFT provides a comprehensive graphical visualization of the results, links to several knowledge databases, extensive functional enrichment analysis and combination of predictions for different circRNAs. CRAFT is a useful tool to help the user explore the potential regulatory networks involving the circRNAs of interest and generate hypotheses about the cooperation of circRNAs into the regulation of biological processes.

  bioinformaticscircrna-predictionmirna-mrna-interactionopen-reading-framerna-binding-proteins
  Language:RMarkdown 8

• matteocereda / RNAmotifs

  RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to identify clusters of short sequences, referred to as multivalent RNA motifs, bound by RNA-binding proteins

  splicing-analysessplicing-visualizationrna-splicing-maprna-binding-proteinsmultivalent-rna-motifsalternative-splicing-analysisexonidentify-clustersrna-bindingr
  Language:C++ 8

• rosbashlab / HyperTRIBE

  Software for updated version of TRIBE

  rna-binding-proteinstriberbp
  Language:Perl 6

• ZarnackGroup / BindingSiteFinder

  Package for the definition of biniding sites for iCLIP data

  binding-site-classificationbinding-sitesbioconductor-packageicliprna-binding-proteins
  Language:R 6

• zavolanlab / bindz-rbp

  RBP module for bindz, a bioinformatics tool to detect regulators' binding sites on RNA sequences.

  bioinformaticsbioinformatics-toolrnarna-binding-proteinssnakemake-workflows
  Language:Roff 6

• zavolanlab / RCRUNCH

  Workflow for automated (e)CLIP analysis. From raw fastq to peak calling and motif analysis.

  bioinformaticscliprna-binding-proteins
  Language:Python 6

• bioinformatics-torvergata / BRIO

  BRIO: a web server for RNA sequence and structure motif scan (https://doi.org/10.1093/nar/gkab400)

  rnarna-secondary-structurerna-binding-proteinsrna-motifsbeambearencoding
  Language:HTML 4

• rosbashlab / TRIBE

  rna-binding-proteinssequencing-rnaadar
  Language:Perl 3

• JingQiChong / nf_CRACpipeline

  A Nextflow workflow for processing and analyzing CRAC data

  cracrna-binding-proteinsrna-bioinformaticsrna-seq
  Language:Nextflow 1

• mRcSchwering / RBDpredict

  R package for unbiased enigm RNA-binding protein (RBP) prediction based on shrinkage discriminant analysis. Enigm RBPs have been found to make up for one half of all RBPs.

  r-packagerna-binding-proteinssdashrinkage-discriminant-analysis
  Language:R 0

• sivkri / RBP-Data-Processing

  RBP-Data-Processing is a repository containing R code for processing RNA-binding protein (RBP) datasets. The code imports the data table, performs data cleaning and transformation operations, and saves the processed dataset. It provides a convenient and reproducible workflow for analyzing RBP data obtained from external sources.

  gene-expression-analysisrrna-binding-proteinstidyr
  Language:R 0

• SoniaRuiz / splicing-accuracy-manuscript

  Code for the manuscript "Splicing accuracy varies across human introns, tissues and age".

  ageinggtexv8rna-binding-proteinsrna-seq-analysissplice-junctionssplicing-analysesrecount3
  Language:HTML 0