promoters

There are 0 repository under promoters topic.

• MAGICS-LAB / DNABERT_2

  [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

  datasetdnadna-processingdna-traininggenomegenome-analysislanguage-modelcovidpromoterpromoter-analysispromoterssplicesplice-sitetranscription-factor-bindingtranscription-factor-binding-sitetranscription-factors
  Language:Shell 217

• saketkc / gencode_regions

  Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

  cdsexongencode-filesgencode-regionsgenegtf-readerpromotersutr
  Language:Jupyter Notebook 95

• CharlesSanfiorenzo / Bioinformatics

  Bioinformatics N' Stuff

  bioinformaticspromoterspromoter-activityalignmentvariant-callingmutation-loadgene-copiesclustering
  Language:Shell 5
• PromKappa-1.0-makes-Objective-Digital-Stains

  Gagniuc / PromKappa-1.0-makes-Objective-Digital-Stains

  PromKappa 1.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns).

  odsobjectivedigitalstainsbioinformaticsgeneticsgenomicsvb6genespromotersdna
  Language:Visual Basic 6.0 5
• PromKappa-3.0-Objective-Digital-Stains-in-VB6

  Gagniuc / PromKappa-3.0-Objective-Digital-Stains-in-VB6

  PromKappa 3.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns). The main output of the application consists of a series of images that are saved in the 'chart' (or 'chart_comp') folder and which can be later analyzed using different methods.

  bioinformaticsodsdigitalstainsgenomicsgeneticsgenespromotersdnavb6objective
  Language:HTML 4

• pughlab / BCa_ATACSEQ_Project

  This repository contains custom code used for analysis in El Ghamrasni et al.,

  atac-seqpromoterscis-regulatory-elementscistromenon-coding-variants
  Language:R 2

• MetabolicEngineeringGroupCBMA / YeastPathwayKit

  Yeast pathway kit promoter and terminator vectors and other related public information. Do not put secret information here.

  plasmidsvectorpromoterspydna
  Language:Jupyter Notebook 0

• yenon118 / SoybeanGenVarX

  The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.

  genomic-variationsindelsphenotypespromoterssnpstranscription-factorswhole-genome-resequencing-datacopy-number-variationssoybean
  Language:PHP 0

• ytanaka-bio / cisMultiDeep

  Workflow to identify functional cis-regulatory regions for each annotated cell type

  cis-regulatory-elementscross-speciesdeep-learningenhancershi-cpromotersshapsingle-cell-atac-seqsingle-cell-methylationsingle-cell-multiomicssingle-cell-rna-seq
  Language:Python 0

• ErillLab / pHunter

  Python second-order approximation to the PromoterHunter code

  bioinformaticspromoterstranscriptional-regulations
  Language:Python

• yenon118 / GenVarX

  The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.

  copy-number-variationsgenomic-variationsindelsphenotypespromoterssnpssoybeantranscription-factorswhole-genome-resequencing-data
  Language:JavaScript