saketkc

fos-proposals

:gift_heart: :penguin: Archive of GSoC proposals

pysradb

Package for fetching metadata and downloading data from SRA/ENA/GEO

gencode_regions

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

pyseqlogo

Python package to plot sequence logos

pySCTransform

Python package to perform normalization and variance-stabilization of single-cell data

riboraptor

Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)

moca

:m: Tool for motif conservation analysis

scRNA_NB_comparison

Scripts to reproduce the analyses in the paper "Comparison and evaluation of statistical error models for scRNA-seq"

blog

covmuller

Covmuller is an R-package designed for analysis of SARS-CoV-2 sequencing metadata deposited on GISAID

pyFLGLM

pyvirchow

Tools for whole slide image processing and classification

blog-archive

:floppy_disk: => :satellite:

covid19bharat_data

India's district level covid19 data. This is the continued effort carry forwarded by what covid19india.org's team had initiated

pyfastnbfit

Fast fitting for counts data using Minka's algorithm

sctransform

R package for modeling single cell UMI expression data using regularized negative binomial regression

2023_Albicans_Flucanazole

bisc-104

Teaching material used for BISC-104L[Fall 2016] at USC Edit

BISC-305

cobolt

A Python package for jointly analyzing multimodal single-cell sequencing data

genomeofindia

Scripts for GenomeOfIndia substack

infohet

Information in Heterogeneity

misc_bed_availability_scraper

overdispersion_explorer

overdispersion_explorer

ParseBioscience_Barcodes_Corrector

Scripts to generate corrected barcodes list for a list of custom barcodes for ParseBiosciences kit

pdfs

Curated writeups

pertinent

pyro-rethinking

Statistical Rethinking with Pyro

scVI

Deep generative modeling for single-cell omics data

signac

R toolkit for the analysis of single-cell chromatin data