Piyush Acharya's repositories
DNAnalyzer
Precision genomics for everyone, everywhere. Powered by private AI.
PasswordLLM
A fast combinatorial tool that tests your password against real-world scenarios utilizing a novel Bayesian Machine Learning (BML) approach.
VigenereDecrypter
Decrypt Vigenère ciphers with missing keys through language-agnostic Chi-squared statistical tests.
IlluminaLogVision
Illumina NovaSeq 6000 server log parsing and analysis for BaseSpace and bcl2fastq pipelines.
quickfilters
Select any number of images, and they will be batch converted instantly, with no loss of resolution.
VerisimilitudeX
My personal repository
github-readme-stats
:zap: Dynamically generated stats for your github readmes
hcb-mobile
A Mobile App Implementation of HCB
introtodeeplearning
Lab Materials for MIT 6.S191: Introduction to Deep Learning
ocr_pdf2txt
Use Optical Character Recognition technology to convert scanned PDFs into TXT files locally.
ocr_pdf2txt-demo
Demo for the ocr_pdf2txt Python library
Bismark
A tool to map bisulfite converted sequence reads and determine cytosine methylation states
deepcpg
Deep neural networks for predicting CpG methylation
DMAP
Differential Methylation Analysis Package
Eagle
Haplotype phasing software
epi-impute
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
exo
Run your own AI cluster at home with everyday devices 📱💻 🖥️⌚
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
manim
A community-maintained Python framework for creating mathematical animations.
MRCNN
MRCNN provides a deep-learning method for prediction of single-CpG-site methylation level with only local DNA sequences. It is implemented by deep learning library Tensorflow (version of tensorflow-gpu 1.2.0). It can be used for regression of continuous value of methylation and at present it is used for human methylation.
pbwt
Implementation of Positional Burrows-Wheeler Transform for genetic data
TCGA_downloads
How to download TCGA data from GDC portal