contamination-detection
There are 0 repository under contamination-detection topic.
- Language:Jupyter Notebook 115
WayneGitShell / GWSDAT
GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) R-Shiny implementation.
Language:R 30phac-nml / mikrokondo
A simple pipeline for bacterial assembly and quality control
Language:Nextflow 9- decontaminer
amarinderthind / decontaminer
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x
Language:Perl 8 msk-access / biometrics
Python package to calculate various sample contamination metrics.
Language:Python 3- QC-d
alipirani88 / QC-d
Generate Coverage, Quality and Contamination metrics for Sequence data.
Language:Jupyter Notebook 2 raymondkiu / bactspeciesID
Fast microbial species identification (16S rRNA gene-based approach) and contamination check using whole genome assemblies
Language:Shell 2auroramaurizio / my_DNA_seq_pipelines
In this repository I backup the pipelines I write for the project I am involved
Language:Python 1- Language:Python
