microbial-genomes

There are 3 repositories under microbial-genomes topic.

• MrOlm / drep

  Rapid comparison and dereplication of genomes

  bioinformaticsmetagenomicsmicrobiologyassemblymicrobial-genomes
  Language:Python 310

• shenwei356 / LexicMap

  LexicMap: efficient sequence alignment against millions of prokaryotic genomes

  prokaryotic-genomessequence-alignmentsequence-searchalignmentlarge-scale-datasetmicrobial-genomesbacterial-databasebacterial-genomeslexichash
  Language:Go 177

• alipirani88 / Comparative_Genomics

  Micro 612 genomics workshop

  microbial-bioinformatics-workshopmicrobial-genomescomparative-genomicsworkshopngsbioinformatics-tutorialsgenomicsvisualization
  Language:Shell 37

• czmilanna / nanoforms

  The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056

  bioinformaticsdna-assemblydna-sequencinggenomicsmicrobial-genomesngsoxford-nanoporewebserver
  Language:JavaScript 11

• pburnham50 / LowBiomassBackgroundCorrection

  R package and vignette to denoise metagenomic cell-free DNA sequencing data.

  cfdnadiagnosticsmicrobial-genomes
  Language:Roff 9

• MaryAgopian / Variant_Barcoding_M.orygis

  Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.

  bacterialbacterial-genome-analysisbacterial-genomesbioinformaticsbioinformatics-pipelinegenomic-data-analysisgenomic-data-sciencegenomicsgenomics-visualizationmicrobial-genomesmicrobiologymycobacterium-bovismycobacterium-tuberculosismycobacterium-tuberculosis-complextuberculosismycobacterium-orygis
  Language:R 0

• sciencegenome / bacdive

  bacdive microbial genotypes genomeinformatics

  bacdivebioinformaticsdsmzmetagenomesmicrobial-genomesmicrobial-genomicswebpack
  Language:Rust 0