genomematt

xenomapper

A utility for splitting mixed origin NGS reads

pylazybam

A pure python lazy BAM parser

xenomapper2

A utility for splitting mixed origin NGS reads with secondary or alt mappings

pebbles

survivalvolume

A set of tools for parsing measurement with threshold over time data (eg tyre wear, tumour treatment studies) and generating interactive and static plots.

fqfa

A lightweight Python library for handling FASTQ and FASTA files.

nixpkgs

Nix Packages collection

AmBiVErT

AMplicon BInning Variant caller with ERror Truncation

BioNix-Training

Repo to host Oct 2022 BioNix Training material

cogent3

Comparative Genomics Toolkit 3

comp90014_workshops

Programming tutorials used in COMP90014 labs.

CountESS

Python3 successor to Enrich2.

CountESS-1

CountESS

dgeclust

Hierarchical Non-Parametric Bayesian Clustering of Digital Expression Data

dms-view.github.io

Interactive visualization of mutational antigenic profiling data

lscc_docs

LSCC documentation in markdown format

mpld3

D3 Renderings of Matplotlib Graphics

mplexporter

A general scraper/exporter for matplotlib plots

pipeline_base

Infrastructure for bioinformatics pipelines based on Ruffus

pycogent

PyCogent: Official repository for software and unit tests

rubra

Infrastructure code to support DNA pipeline

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

shell-genomics

Lesson for the shell for genomics

test_jupyter_live

vcf-venn

A tool to compare variants contained within multiple vcf format files, to determine common and unique variants to each file. To write these variants to a new file also in vcf format.

WFA2-lib

WFA2-lib: Wavefront alignment algorithm library v2

whitewether

A collection of Nix expressions for creating Jupyter lab environments