Sentieon

Sentieon's repositories

sentieon-scripts

Helper scripts for biological data processing from Sentieon

Language:ShellBSD-2-Clause64 3 9

sentieon-dnaseq

Sentieon DNAseq

Language:Shell23 40

hap-eval

A VCF comparison engine for structual variant benchmarking

Language:PythonBSD-2-Clause19 2 11

sentieon-models

Model files for Sentieon variant callers

14 1 5

sentieon-dnascope-ml

Sentieon DNAscope + Machine Learning Model

Language:Shell12 20

sentieon-cli

A command-line interface for Sentieon pipelines

Language:PythonBSD-2-Clause9 2 1

sentieon-docker

Example Dockerfiles for use with the Sentieon software

Language:DockerfileBSD-2-Clause9 2 1

Sentieon-WDL

WDL pipelines for the Sentieon tools

Language:WDLBSD-2-Clause9 1 1

sentieon-amazon-omics

Sentieon pipelines for AWS HealthOmics

Language:WDLBSD-2-Clause8 1 5

vcflib

An open-source Python library for parsing and manipulation of VCF

Language:PythonBSD-2-Clause8 1 1

sentieon-google-genomics

Run Sentieon pipelines on Google Cloud Platform

Language:ShellBSD-2-Clause6 3 2

sentieon-matching-performance

Accuracy and runtime benchmarks for the Sentieon GATK-matching tools

Language:ShellBSD-2-Clause6 20

aws-benchmark-scripts

Scripts used in benchmarking Sentieon DNAseq and DNAscope pipelines on AWS EC2

Language:Python5 10

Sentieon-cwl

CWL pipelines for the Sentieon tools

Language:Common Workflow LanguageBSD-2-Clause4 40

terraform

Terraform configuration files for the Sentieon software

Language:HCLBSD-2-Clause1 10

toil

A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python

Language:PythonApache-2.0040