relion

There are 5 repositories under relion topic.

• 3dem / relion

  Image-processing software for cryo-electron microscopy

  microscopycryo-emhpccudaimage-processingbiomolecular-dynamicsmolecular-biologymolecular-structuresatomistic-modelsctfhigh-performance-computinggraphics-programmingguimicroscopeoptimization-algorithmsmaximum-likelihoodlikelihoodrelionregularizationnvidia
  Language:C++ 466

• Guillawme / cryoEM-scripts

  Utilities to help cryoEM data analysis

  cryo-emdata-analysisrelionscripts
  Language:Shell 20

• sami-chaaban / starparser

  Manipulate and mine Relion .star files

  relioncryo-emelectron-microscopy
  Language:Python 19

• DaisukeMiyamoto / aws-parallelcluster-relion

  example set up for Relion on AWS ParallelCluster for CryoEM

  aws-parallelclusterrelioncryoemcryo-em
  Language:Shell 12

• arunabh98 / EPFL-CryoEM

  Implementation of a Bayesian approach to cryo-EM structure determination

  bayesian-optimizationcomputer-visioncryo-emimage-processingrelion
  Language:Matlab 9

• cianfrocco-lab / cryoem-cloud-tools

  Software to integrate Relion GUI with Amazon Web Services, accompanied by easy command line tools. Learn more at cryoem-tools.cloud

  awscryo-emrelion
  Language:C++ 8

• Guillawme / angdist

  Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles

  visualizationplothistogramcryo-emrelioncryoemorientationseuler-angles
  Language:Python 6

• eriksjolund / install-cryo-em-workstation

  Step-by-step instructions for installing an Ubuntu workstation with standard cryo-em software

  cryo-emdocumentationinstallation-scriptinstallation-automationrelion
  5

• azazellochg / relion-external-jobs

  Python scripts for Relion external job type

  pythonrelion
  Language:Python 4

• Guillawme / localres

  Plot the histogram of local resolution values of a cryo-EM reconstruction

  relioncryo-emcryoemplothistogramresolutionlocal-resolutionvisualizationcryosparcvisualiz
  Language:Python 4

• PlethoraChutney / exawatcher

  A lightweight script to monitor RELION jobs and send information over Slack DMs

  cryoemrelion
  Language:Python 4

• Stefan-Zukin / relionReport

  RelionReport is a tool which generates a report and animation from a given relion 3DClass, Refine3D or InitialModel job. RelionReport aims to give more meaningful output from relion jobs to aid in making processing decisions and presenting processing data.

  relion
  Language:Python 4

• Guillawme / classconvergence

  Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION

  cryo-emcryoemvisualizationrelionclassification
  Language:Python 3

• Guillawme / countparticles

  Report the number of particles in each class from a run_data.star file produced by RELION

  cryoemclassdistributionvisualizationrelionplotcryo-em
  Language:Python 3

• rajanprabu / cryoem-scripts

  helper scripts for Electron microscopy data processing

  emcryoemrelionemanimodelectron-microscopy
  Language:Python 3

• wjrice / tiltgroup_wrangler

  Software to divide data collected using Leginon into optics groups according to image shift

  cryo-emcryosparcpythonrelion
  Language:Python 3

• bwmr / tbl2imod2relion

  Subtomogram Averaging using Dynamo, imod, Relion and MatLab

  cryoetdynamoimodmatlabnovactfrelionsubtomogram-averaging
  Language:MATLAB 2

• chris-hypercag / cemc-sherlock-scripts

  Sbatch scripts for submitting cryo-EM jobs on Stanford's Sherlock compute cluster.

  cryo-emcryosparcrelionsherlockstanford
  Language:Shell 1

• ZhenHuangLab / imod2relion

  A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

  cryo-emcryo-etimodrelion
  Language:Python 1

• ZhenHuangLab / tbl2star

  A tool converting DYNAMO table files(.tbl) to RELION star files(.star)

  cryo-emcryo-etdynamorelionstarfiles
  Language:Python 1

• bwmr / starsplitter

  Split relion star files by tomogram or Warp directory.

  relionteamtomowarp
  Language:Python 0

• ninthpower / OJcryo

  A suite of Odd-Job scripts for cryo-em data processing.

  unblurojcryorelioncryo-emmotioncor2ninthpowermicroscopytiff-files
  Language:Shell 0

• tomotools / subtomotools

  Some scripts to facilitate subtomogram-averaging workflows.

  cryo-etrelionsubtomogram-averagingtomotwinwarp
  Language:Python 0